Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13100 465 / 4e-165 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037045 [exp] 699 / 0 AT5G13100 471 / 1e-167 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168300 [exp] 519 / 0 AT5G13100 481 / 1e-171 unknown protein Potri.001G059700 [exp] 493 / 2e-176 AT5G13100 478 / 1e-170 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015761 pacid=23167726 polypeptide=Lus10015761 locus=Lus10015761.g ID=Lus10015761.BGIv1.0 annot-version=v1.0 ATGGGGGGAAAGTTATTATGTGATTCCACTGCCGTCGCGGAGACCATATTTGACACCTCTTCATCGGTCGTCCTTTGGAGAGACCCCAACGCCGCCGGCG CGGTGGATCTCGGCGACCAGACAATATCTTACGTCACAACCACCGTTACCGGCGGATGGGACGATGTGATTGGCCTCGAGGACCAGCAGAGGCGCCATTT GAAGCGCCTCCACGCAAAGGGTGTACTCTGGAAGCTCCCCAACGCCGACGACGAGGACAACGCATCCGGATCCCCATGCCTGCCGCACAGATCAATGGTG TTCCGGCTCACACACGGCGGCGAGGTTTCGTCCGACGGCAACTGCCTCTTCACCGCGTCGCAGAGGGCGATGGGTGCTGCGCGTGACGTCGACGCGCGTG AGCTCCGGCGGCGGACGGTTCTTCGGTTCTTGGAGGACTTTGGATCCGCCGCCGAGGAAAAGAAGGGCGTGATTAACGACGCGATTCGGCACATGTACTC GCCGGATCTGAAGAATGGGTGGGGGATTCACATCGTCCAGGAGGTGAAGCTCTTGGCCAAGAAAGAAGACCGCGCCGCTCTCGATTCTGGGATTGATGAA CTCCTCCAGCTCGGGATGCAAAGACCGCTGGCGGCTGAGTCGATTTACAAAGAGAGGTGTATTCCGGTGGATGATGGTCCGAGTTGGGCAAAGTACATGG CGATCTCTGGTTTACCTGAGGATGAACACGATATTATTACCTTGCAATACACGGATGAAGGTTTGTTATCCGTAGAAGAGAACAGAGAAGGCCATGCCGC TGCTTTTGGTGATGATATAGCAATCGAGTGTCTTGCCACCGAGTTCAAGCGCGAGATCTACGTGGTTCAAGCACACGGAGCTGATGCAATGGTAGATGAA GACAATTGTGTGTTCTTCCTGCCACACCGGCCAAGGAGTGAAATTTGTCAGCCTCCCTTCTTTCTGTTCATGAAAGGAACAGGATGGTCGGTAGCCGGAG CTGATCACTACGAACCACTGATTGCCCATCCATCAGCGGTAGTTTCGCAAGAGAAAGTTGCCCTAGTACTTTGA
AA sequence Show only first row Show all	>Lus10015761 pacid=23167726 polypeptide=Lus10015761 locus=Lus10015761.g ID=Lus10015761.BGIv1.0 annot-version=v1.0 MGGKLLCDSTAVAETIFDTSSSVVLWRDPNAAGAVDLGDQTISYVTTTVTGGWDDVIGLEDQQRRHLKRLHAKGVLWKLPNADDEDNASGSPCLPHRSMV FRLTHGGEVSSDGNCLFTASQRAMGAARDVDARELRRRTVLRFLEDFGSAAEEKKGVINDAIRHMYSPDLKNGWGIHIVQEVKLLAKKEDRAALDSGIDE LLQLGMQRPLAAESIYKERCIPVDDGPSWAKYMAISGLPEDEHDIITLQYTDEGLLSVEENREGHAAAFGDDIAIECLATEFKREIYVVQAHGADAMVDE DNCVFFLPHRPRSEICQPPFFLFMKGTGWSVAGADHYEPLIAHPSAVVSQEKVALVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13100			unknown protein		Lus10015761 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	1.4	0.8455
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	8.1	0.8229
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10017550 [exp]	8.2	0.7764
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	10.0	0.8218
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	12.4	0.8205
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	13.3	0.7957
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	13.5	0.8320
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	14.7	0.7725
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	14.7	0.8137
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10041045 [exp]	15.5	0.7684

Compare expression of checked genes

Lus10015761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.