Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02960 109 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 99 / 6e-25 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 86 / 1e-19 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT5G60800 56 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G24580 55 / 7e-09 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G03380 47 / 4e-06 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G37860 46 / 6e-06 Heavy metal transport/detoxification superfamily protein (.1) AT3G24450 45 / 7e-06 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 46 / 8e-06 Heavy metal transport/detoxification superfamily protein (.1.2) AT3G56240 44 / 1e-05 ATX1, CCH copper chaperone (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037044 [exp] 282 / 8e-97 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10012867 [exp] 86 / 6e-19 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030514 [exp] 77 / 2e-16 AT5G50740 221 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 74 / 2e-15 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10038785 [exp] 74 / 2e-15 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10021432 [exp] 57 / 2e-09 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 57 / 2e-09 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 57 / 3e-09 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 57 / 3e-09 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017600 [exp] 107 / 6e-29 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.015G099500 [exp] 94 / 1e-22 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G006600 [exp] 90 / 2e-21 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 89 / 8e-21 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.006G006100 [exp] 87 / 2e-20 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.004G214700 [exp] 62 / 3e-11 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.009G007600 [exp] 61 / 1e-10 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 54 / 3e-08 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.018G076400 [exp] 50 / 9e-08 AT3G24450 151 / 4e-48 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 51 / 2e-07 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10015762 pacid=23167702 polypeptide=Lus10015762 locus=Lus10015762.g ID=Lus10015762.BGIv1.0 annot-version=v1.0 ATGGCAAAGGGAGATATCATCTTCAAGGCTCTCATTCATTGCGAAGGATGCGTCACACAAATCAACAAATGCCTAGCAGGATTTGGCGGAGTGGAAGATG TTTCGATCGAGAGGGAGAATGATATAGTAGTAGCCAACGGGAACAACCTCGACTCATTGAAGTTGCTAGCTAGGCTGCAAAGCAAGTACAGTAGAAACGT GGAGTTGATTTCACCTATACCCAAACCCAAGCCCCAACTCCAAGACAAGAAACAGCCACCATCAAAGCCCGAGCCAAAGATAAAGACAGTGGTGCTCAAA GTGTTGATGTTCTGCCAAGGATGTGCAGACGACATCGAGAGAACAGTGGGGAAGATGGAAGGCGTGGTGAGTGTGGAAGCAGAAATGGAGAGTTCGACGG TAGTGGTGATTGGGTTCTTTGATGCAGAGAGATTGGTTGAGAAGGTGAGGAAGCAATTAAGGAAGAAAGTTGAGGTGTTGAAATTACTAGAAGAGAGTAA AGGGAAAGCTGAGGCGCCTAAAGTGGAGAAACCTCCTCCTTCTGCTCCTCCTGCTCCAGATGATCAGTATGTGTGTTTTTGTACTGCTCATCCGCATCAA CCTTTTCTAGCCAGAGGATCAGAAGGGGCCGTCCATCCTTCCCTCGTTTTCAACGACGACAATGTCTTTGCTTGCTCAATCATGTGA
AA sequence Show only first row Show all	>Lus10015762 pacid=23167702 polypeptide=Lus10015762 locus=Lus10015762.g ID=Lus10015762.BGIv1.0 annot-version=v1.0 MAKGDIIFKALIHCEGCVTQINKCLAGFGGVEDVSIERENDIVVANGNNLDSLKLLARLQSKYSRNVELISPIPKPKPQLQDKKQPPSKPEPKIKTVVLK VLMFCQGCADDIERTVGKMEGVVSVEAEMESSTVVVIGFFDAERLVEKVRKQLRKKVEVLKLLEESKGKAEAPKVEKPPPSAPPAPDDQYVCFCTAHPHQ PFLARGSEGAVHPSLVFNDDNVFACSIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	0	1
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	2.0	1.0000
					Lus10005514 [exp]	2.2	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	3.0	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	3.9	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	4.2	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	4.9	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	4.9	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	5.7	1.0000
AT5G27260			unknown protein		Lus10032874 [exp]	6.0	1.0000
AT4G17920			RING/U-box superfamily protein...		Lus10035368 [exp]	6.2	1.0000

Compare expression of checked genes

Lus10015762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.