Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27990 271 / 1e-91 unknown protein AT5G52420 112 / 6e-30 unknown protein AT5G23920 89 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037043 [exp] 422 / 4e-151 AT1G27990 306 / 2e-105 unknown protein Lus10039248 [exp] 111 / 2e-29 AT5G52420 212 / 8e-69 unknown protein Lus10039249 [exp] 96 / 4e-24 AT5G52420 160 / 2e-49 unknown protein Lus10027495 [exp] 92 / 2e-22 AT5G52420 159 / 8e-49 unknown protein Lus10027493 [exp] 45 / 3e-06 AT5G52420 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168400 [exp] 310 / 4e-106 AT1G27990 318 / 5e-109 unknown protein Potri.001G059500 [exp] 300 / 4e-103 AT1G27990 308 / 7e-106 unknown protein Potri.015G146400 [exp] 127 / 7e-36 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 72 / 4e-15 AT5G52420 126 / 3e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015763 pacid=23167655 polypeptide=Lus10015763 locus=Lus10015763.g ID=Lus10015763.BGIv1.0 annot-version=v1.0 ATGGGGGGAATAATGGGGTCCCTCCGTGTAATAGAGCTACAACTAGTAGCCTTCATAATGGTATTCTCACTCAGCGGCCTCGTCCCTCTCCTTGACTTGG TCTTCCCTCTCTTCGTATCCGCTTACCTCCTCGCCCTTTCCCGCCTCGCCTTCCCTTCTTCCGGCAGATTGGGGTCCACGTCATCCTCCTCGGAGACGAC GATATTTCACGGGAGCCGGATTTTCAGGGCGTACGTCATCCTGGGGACCACCATCGGATTGTTTCTTCCTCTGGCCTATGTACTTGGCGGTTTCGCCAGG GGAGACAACAGCGCCGTGAAATCGGCAACTCCTCATTTGTTCTTGCTGTCGTGTCAAATTCTCACCGAGAATTTGGTCGGCGGGTTGGGATTGTTCTCGC CGCCGGTCAGAGCGCTGGTTCCGTTGATGTATACTGTGAGGAGGGTGTTTGTGATTCTTGATTGGATTCGCGATGTTTGGATCGACAAGACTCTCGCCCC TGATGCCGACTTCGCGGAGGTGGGTTGGTATTGGTTCGGGAAGGGATTAGCGGTAGCGAATATGGGATATTTCTCAACGAACCTGCTCTGCTTTCTGATC CCAAGGTTTCTACCGAGAGCATTTGAGAAGTATTTCAATGAAATGAGGGATCAGGAGATCCACTCCAAGATGGCAGAGGATAAGCGTTCCAGCAGCAAAC TATCTCAACAGCCGCCAGAGAAGAAGGCTGATTAG
AA sequence Show only first row Show all	>Lus10015763 pacid=23167655 polypeptide=Lus10015763 locus=Lus10015763.g ID=Lus10015763.BGIv1.0 annot-version=v1.0 MGGIMGSLRVIELQLVAFIMVFSLSGLVPLLDLVFPLFVSAYLLALSRLAFPSSGRLGSTSSSSETTIFHGSRIFRAYVILGTTIGLFLPLAYVLGGFAR GDNSAVKSATPHLFLLSCQILTENLVGGLGLFSPPVRALVPLMYTVRRVFVILDWIRDVWIDKTLAPDADFAEVGWYWFGKGLAVANMGYFSTNLLCFLI PRFLPRAFEKYFNEMRDQEIHSKMAEDKRSSSKLSQQPPEKKAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27990			unknown protein		Lus10015763 [exp]	0	1
AT5G14090			unknown protein		Lus10037042 [exp]	1.0	0.9553
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	3.0	0.9271
AT2G39440			unknown protein		Lus10040607 [exp]	4.5	0.9351
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	5.3	0.9160
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	8.8	0.9097
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	11.8	0.8713
AT5G21910			unknown protein		Lus10038069 [exp]	14.3	0.9125
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	14.7	0.8985
AT2G39440			unknown protein		Lus10018300 [exp]	14.7	0.9149
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	17.3	0.8863

Compare expression of checked genes

Lus10015763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.