Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50570 152 / 1e-42 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 152 / 1e-42 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 132 / 8e-35 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G69170 127 / 4e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G20980 130 / 9e-33 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 128 / 5e-32 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27360 124 / 6e-32 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G47070 122 / 3e-30 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 122 / 4e-30 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G53160 112 / 2e-29 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011348 [exp] 223 / 3e-70 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 218 / 2e-68 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10037041 [exp] 126 / 7e-36 ND 104 / 1e-28 Lus10021141 [exp] 129 / 5e-33 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 127 / 5e-32 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 122 / 3e-31 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021614 [exp] 122 / 5e-31 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10000643 [exp] 122 / 2e-30 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 118 / 2e-30 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058600 [exp] 294 / 3e-97 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 281 / 5e-93 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 174 / 5e-51 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.015G098900 [exp] 173 / 3e-50 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.008G097900 [exp] 135 / 3e-35 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.002G002400 [exp] 131 / 4e-33 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.010G154300 [exp] 128 / 1e-32 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.018G149900 [exp] 125 / 6e-32 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.005G258700 [exp] 127 / 7e-32 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.014G057700 [exp] 122 / 1e-31 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10015764 pacid=23167687 polypeptide=Lus10015764 locus=Lus10015764.g ID=Lus10015764.BGIv1.0 annot-version=v1.0 ATGTTCCATGGTTGTAACTTGAAGGAGCATTTTGGTTCAGCTGGGATTGGAGAACAAGGCATCTCCCAGCTCCTAGTGCCTAGAATCGCGGAAACAGTGA ATCAAAGTTCTAATCTTTGCTCGGTAGATTTAAAGCTTGGGATGGAATCTTCATGTTCAGGACCATCAAAGAAAGCCAAGTTGCCAACTAGTGGATCTGG CCAACAAGTTCCCGTTTGCTTAGTCGATGGATGCATTTCGGACCTTGGTGAATGCAGAGACTATCATCGACGGCATAAGGTGTGCGAGCTCCATTCCAAA ACTGCCAGAGTTTTCGTTAAAGGCCGGGAACAAAGATTCTGCCAGCAGTGTAGCAGGTTCCACTCATTGGGAGAGTTTGATGAAGGAAAACGGAGCTGCA GAAAACGTCTTGATGGTCACAACAGAAGAAGGAGGAAGCCTCAGCACCCGGATCCTCTATCTCTCAGTTCTGCCAGGCTATTCTGTGATCACCAAGGCAC CAGATACTTGCAGTTTGGCAGCTCGCAGGTTTTCGCAACAAGTGCTGCAACTTCAGCTTGGGCCGAGACTGTGAAAGCTGAGAATGATAGCATGCTCTAC AGCAGCAGCAGCAACCAGTCCACACTGGACTTCATAAACAACAAACGTCTTGTTCATCCTGCAGCATTGTCCCAGCACAATTACAGAGGAAAACAGTTTC CTTTCTCACAAGGCACGACAAGCTCCCCAGTTCCTGGAGATTCTCCTGGCTCATGTCAGCAAGGTTTTCAAGTCAATCCCACATTAGGCAGCCATGGAAG CAGTCACAAGATGTTCTCCTCCAATGGGACGAACCACGTGATTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCTCTACCACCACTATGTGAGGCTACT CCGGAGATCGGTTCGAGTCACGTGGTCCATCTACCAGGTCCAGGAGCAGCTCAATCTTCAATGCCGACAAATTTGAGATACCTTGGTATGAAAACTGAAC CAATTGGATCAGTTTTGGTCAGTAACAACAGCAGCCATGATGTTAGTAGTGGTCTCCATCACCAGAACCAGGGGGGTTTGTTTCAGATTGGACCTGATGA TGGGTCGTCTGGAAGTGGGTCTCGTGACCACACTCTTTCTTTCTCTTTTCAGTAA
AA sequence Show only first row Show all	>Lus10015764 pacid=23167687 polypeptide=Lus10015764 locus=Lus10015764.g ID=Lus10015764.BGIv1.0 annot-version=v1.0 MFHGCNLKEHFGSAGIGEQGISQLLVPRIAETVNQSSNLCSVDLKLGMESSCSGPSKKAKLPTSGSGQQVPVCLVDGCISDLGECRDYHRRHKVCELHSK TARVFVKGREQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQHPDPLSLSSARLFCDHQGTRYLQFGSSQVFATSAATSAWAETVKAENDSMLY SSSSNQSTLDFINNKRLVHPAALSQHNYRGKQFPFSQGTTSSPVPGDSPGSCQQGFQVNPTLGSHGSSHKMFSSNGTNHVIDSDRALSLLSSLPPLCEAT PEIGSSHVVHLPGPGAAQSSMPTNLRYLGMKTEPIGSVLVSNNSSHDVSSGLHHQNQGGLFQIGPDDGSSGSGSRDHTLSFSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10015764 [exp]	0	1
AT4G02970		AT7SL-1	7SL RNA1 (.1)		Lus10018370 [exp]	4.5	0.8503
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	8.9	0.8792
AT5G37730			unknown protein		Lus10033584 [exp]	10.3	0.8758
					Lus10027391 [exp]	13.2	0.8191
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	13.9	0.8643
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	14.3	0.8700
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	14.3	0.8625
AT1G13570			F-box/RNI-like superfamily pro...		Lus10004851 [exp]	15.3	0.7927
					Lus10023803 [exp]	16.1	0.8534
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	19.4	0.8522

Compare expression of checked genes

Lus10015764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.