Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10140 90 / 6e-24 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G37940 88 / 1e-22 MADS AGL21 AGAMOUS-like 21 (.1) AT2G03710 87 / 1e-22 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G57390 88 / 2e-22 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G45650 87 / 5e-22 MADS AGL6 AGAMOUS-like 6 (.1) AT5G65060 85 / 5e-22 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) AT5G13790 87 / 7e-22 MADS AGL15 AGAMOUS-like 15 (.1) AT1G24260 85 / 1e-21 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 85 / 2e-21 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT5G65070 84 / 2e-21 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037039 [exp] 113 / 4e-34 AT5G10140 93 / 2e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003123 [exp] 92 / 7e-26 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10035029 [exp] 89 / 1e-24 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10029556 [exp] 87 / 2e-23 AT3G57230 104 / 7e-29 AGAMOUS-like 16 (.1.2) Lus10034370 [exp] 87 / 2e-22 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 86 / 2e-22 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10011349 [exp] 84 / 2e-22 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10028214 [exp] 83 / 2e-22 AT2G14210 117 / 1e-34 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) Lus10034662 [exp] 87 / 3e-22 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058200 [exp] 93 / 5e-25 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169850 [exp] 93 / 1e-24 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G170200 [exp] 92 / 1e-24 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169700 [exp] 89 / 2e-23 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170000 [exp] 89 / 3e-23 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.006G048700 [exp] 89 / 8e-23 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.014G074100 [exp] 87 / 4e-22 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 86 / 7e-22 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.005G150501 [exp] 86 / 1e-21 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.003G169600 [exp] 86 / 1e-21 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10015766 pacid=23167627 polypeptide=Lus10015766 locus=Lus10015766.g ID=Lus10015766.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGAAAGATGGAGCTGAAGCGAATCGAAGACAAGAGCAGCCGGCAAGTAAGCTTCTCGAAAAGGAGGAAAGGATTGATGAAAAAGGCAAGAG AGATCTCAATCCTCTGCGATGCCCAACTTGCCCTCCTCGTCTTCTCCTCCCACGGCAAGCTTTATGATTTCTCTAGCCACCACTCCAGCAACTCGAGTTA TTGCGATAGAACGGTTAGAACGGTTCTCCGTGCGCTATTAATTGAAACCTCTCTTCGGCATTGTGCCAACATCAATCTCCTTTCACACACTTGGGTTTTA ATTGCGTATTAA
AA sequence Show only first row Show all	>Lus10015766 pacid=23167627 polypeptide=Lus10015766 locus=Lus10015766.g ID=Lus10015766.BGIv1.0 annot-version=v1.0 MGRRKMELKRIEDKSSRQVSFSKRRKGLMKKAREISILCDAQLALLVFSSHGKLYDFSSHHSSNSSYCDRTVRTVLRALLIETSLRHCANINLLSHTWVL IAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	0	1
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	2.4	0.8597
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	4.5	0.8594
AT5G06440			unknown protein		Lus10016186 [exp]	8.3	0.8474
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	9.8	0.8437
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	11.3	0.8297
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	14.7	0.8387
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	16.5	0.8025
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	17.0	0.8214
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	17.1	0.8372
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	17.9	0.8011

Compare expression of checked genes

Lus10015766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.