Plant FIBer expression Database

Lus10015767 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27290 129 / 4e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037037
[exp]
189 / 2e-62 AT1G27290 144 / 1e-44 unknown protein
Lus10003121
[exp]
140 / 6e-43 AT1G27290 152 / 8e-48 unknown protein
Lus10011352
[exp]
142 / 1e-39 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G058100
[exp]
142 / 2e-44 AT1G27290 131 / 6e-40 unknown protein
Potri.003G170300
[exp]
138 / 7e-43 AT1G27290 129 / 2e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10015767 pacid=23167676 polypeptide=Lus10015767 locus=Lus10015767.g ID=Lus10015767.BGIv1.0 annot-version=v1.0
ATGATGAGAAGGCAGCAGCAGCAGCATCAAGATCAGTACTCCCGCGTTTTCTTCGAGCTATCAACTCTGGTCTTCAACTTGCTCCGTTCGCCACCGACGA
CGATTCCCTTCGCCGACCAGTTGGAGGCTACTGCGCCGCCGTCCGCCGTTTCCCCTTCTCCTTCTTCTTCGAGAATTAGGAGATCGCAGGCGGCGCAGAT
TACGCCGGCGGGATTCGCTTCGCTGCTATTGGGGGTGTCTCTGACGATGATGCTGTGTGGATCCGTGACTTTCTTTATCGGGTTCATGCTGATGCCGTGG
GTTCTTGGACTTGTAATGGTGTTCTACGTCGCTGGGATTGTGTCAATGATCTCCATGTTAGGGCGTTCGCTTTTTTGTTACGCCACCGGACCTCCTCCTC
CTCTTCATCATCATACAAAGGAAGTTCCCGGTAAGAATCATCCTATCCATTCAATTCCTCTGGTTTAA
AA sequence
>Lus10015767 pacid=23167676 polypeptide=Lus10015767 locus=Lus10015767.g ID=Lus10015767.BGIv1.0 annot-version=v1.0
MMRRQQQQHQDQYSRVFFELSTLVFNLLRSPPTTIPFADQLEATAPPSAVSPSPSSSRIRRSQAAQITPAGFASLLLGVSLTMMLCGSVTFFIGFMLMPW
VLGLVMVFYVAGIVSMISMLGRSLFCYATGPPPPLHHHTKEVPGKNHPIHSIPLV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27290 unknown protein Lus10015767
[exp]
0 1
AT1G27290 unknown protein Lus10037037
[exp]
1.0 0.8901
AT5G59960 unknown protein Lus10005446
[exp]
2.4 0.8644
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Lus10027276
[exp]
4.6 0.8557
AT5G14880 Potassium transporter family p... Lus10014531
[exp]
7.7 0.8468
AT4G31040 CemA-like proton extrusion pro... Lus10021616
[exp]
11.2 0.8427
AT3G26380 Melibiase family protein (.1) Lus10006226
[exp]
14.0 0.8029
AT3G09880 ATB' BETA, ATB'... Protein phosphatase 2A regulat... Lus10021511
[exp]
14.1 0.8291
AT5G52190 Sugar isomerase (SIS) family p... Lus10014993
[exp]
14.7 0.8310
AT4G28570 Long-chain fatty alcohol dehyd... Lus10003621
[exp]
14.7 0.7965
AT5G56610 Phosphotyrosine protein phosph... Lus10012928
[exp]
15.9 0.8049

Lus10015767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.