Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54000 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016465 [exp] 173 / 1e-53 AT3G54000 56 / 8e-09 unknown protein Lus10001433 [exp] 45 / 3e-05 AT5G59050 80 / 9e-17 unknown protein Lus10042573 [exp] 42 / 0.0002 AT4G02830 66 / 2e-13 unknown protein Lus10014334 [exp] 42 / 0.0004 AT5G64970 499 / 7e-174 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038600 [exp] 49 / 1e-06 AT5G59050 112 / 3e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015768 pacid=23167628 polypeptide=Lus10015768 locus=Lus10015768.g ID=Lus10015768.BGIv1.0 annot-version=v1.0 ATGGCTCAGTACATGCTCCAGGATTTCGACGACCCTTCTCAAAATACGCCCCATCCAATCCAGGAAGAGGCGGGTGATGATATGAAGCAACGGGAAAAAT CGACACTTGATCAAAATCAAGTTCACCCTGTTTCCGAGTTCCAGAATTCGCTCTGTTCAGGTGAAACAGAGGAAAGAACAGAGTTTTGGTCAACGGGTTT GCCGCCGGTCAACAACACCGACAACAACAAGGGAAAGAAACCGTCATGGTGGTTGCAACAGCAGAGCATACGAAGCGGCGGCGGCAGATTTCTGGAGGTG ATGAGGGCTGTTTTCCTAGGCGATTCCGGTAAAGCTTCGACAACCGGGACCAGCGTGTTCTTGCCGAGGGTGGCCGGGAACAGTACTACTACCACCACTG CACCTTCCGTTAAATCACGGAAGAAACCAGGACGTACTAATCTCAATGACTTTGAAAACGCAGGATATTCCACTGTTTTGTTGGTGAGAGTGGTCCAGGC TTTGTATTATTACCCTCTTCCAATTTCGTTTCCCAGTGAAGAAGGAGAAGAGGAGAATGGTAAGGAAATAGTTGGTGAGAGTGAGAGAGGCGGAGAGAGA AAAGCGGGCTTAGGAGATGCCGCTGCCGGCGGAGGAATGGAAGACGGAAGGCGGTGGTGGCTTTGGTCGCATCGCCGCTAA
AA sequence Show only first row Show all	>Lus10015768 pacid=23167628 polypeptide=Lus10015768 locus=Lus10015768.g ID=Lus10015768.BGIv1.0 annot-version=v1.0 MAQYMLQDFDDPSQNTPHPIQEEAGDDMKQREKSTLDQNQVHPVSEFQNSLCSGETEERTEFWSTGLPPVNNTDNNKGKKPSWWLQQQSIRSGGGRFLEV MRAVFLGDSGKASTTGTSVFLPRVAGNSTTTTTAPSVKSRKKPGRTNLNDFENAGYSTVLLVRVVQALYYYPLPISFPSEEGEEENGKEIVGESERGGER KAGLGDAAAGGGMEDGRRWWLWSHRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015768 [exp]	0	1
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	4.2	0.8542
					Lus10043038 [exp]	6.5	0.8213
AT3G12150			unknown protein		Lus10023826 [exp]	7.4	0.8008
AT1G27070			5'-AMP-activated protein kinas...		Lus10037220 [exp]	9.2	0.7665
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	9.5	0.7677
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	11.0	0.7988
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	11.2	0.8049
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	15.5	0.7660
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	15.7	0.7934
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	16.9	0.8019

Compare expression of checked genes

Lus10015768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.