Plant FIBer expression Database

Lus10015771 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27300 80 / 2e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037034
[exp]
336 / 5e-119 AT1G27300 97 / 4e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G057700
[exp]
97 / 2e-25 AT1G27300 92 / 2e-23 unknown protein
Potri.003G170700
[exp]
91 / 1e-22 AT1G27300 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10015771 pacid=23167615 polypeptide=Lus10015771 locus=Lus10015771.g ID=Lus10015771.BGIv1.0 annot-version=v1.0
ATGGAATCGACTCAAAAGCTGCAGTTCCTCACTGAAGAAATCCAGAGGCTTATAGAAGAGAAGAAGAACCAAGAAGAAGCAGAAGCCTTCGGGGCCGCCG
ATGGAAATTCCATCCCTCTTGACCACACAGATCGCCCTACCCTCTCCAGATTACTCTCCGAGCTGGAATCGTTGAAAGGAGACGGCACGCTGAAGCAGCA
GTCCGGATCATCATCGTCGGAGACGAGCTCGCCTCACTGCGTCGGAGAATCCAAGCCAGGAATCCGAAAAGCACAGACAACGGGCAAGGAAGTGATCGAT
GCGGAAGAGATTAGGAAGGAGATTAAGAAGGTGAAGATGCAGAATTTCATAACGCACTGCCTCCTCTCTGCCTTGATTGTGGTCACTGTAGCTTGGCAAG
TCTCGGAGGTCTCTCTGGCTCTGTCGATCAAGGACAAACTGAGCCACCCTGTGAGATCCTTGGCCAGCGCTATCTTTGGAGGGGGGAGAAATCAAGGTCA
CGACAGAGATGGAGACCAAGAGAGGAAAGATTCTGGTGCAGAAGCCAGTAATGGTTCAACTATGATGATGCCGGGGCTTCCTCAAGTAGACTTCGGCTTT
AATAGTGATGACCGCTCTTAG
AA sequence
>Lus10015771 pacid=23167615 polypeptide=Lus10015771 locus=Lus10015771.g ID=Lus10015771.BGIv1.0 annot-version=v1.0
MESTQKLQFLTEEIQRLIEEKKNQEEAEAFGAADGNSIPLDHTDRPTLSRLLSELESLKGDGTLKQQSGSSSSETSSPHCVGESKPGIRKAQTTGKEVID
AEEIRKEIKKVKMQNFITHCLLSALIVVTVAWQVSEVSLALSIKDKLSHPVRSLASAIFGGGRNQGHDRDGDQERKDSGAEASNGSTMMMPGLPQVDFGF
NSDDRS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27300 unknown protein Lus10015771
[exp]
0 1
AT4G13530 unknown protein Lus10041074
[exp]
1.4 0.9055
AT3G22490 Seed maturation protein (.1) Lus10042604
[exp]
4.2 0.8508
AT3G07720 Galactose oxidase/kelch repeat... Lus10006392
[exp]
5.5 0.8437
AT3G11150 2-oxoglutarate (2OG) and Fe(II... Lus10028972
[exp]
5.5 0.8640
AT1G36980 unknown protein Lus10035779
[exp]
8.2 0.8597
AT4G21865 unknown protein Lus10014471
[exp]
8.8 0.8598
AT1G70000 MYB myb-like transcription factor ... Lus10036678
[exp]
9.2 0.8385
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Lus10022199
[exp]
9.2 0.8499
AT3G14280 unknown protein Lus10037453
[exp]
11.0 0.8374
AT1G36980 unknown protein Lus10037355
[exp]
11.8 0.8541

Lus10015771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.