Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27310 189 / 4e-63 NTF2A nuclear transport factor 2A (.1) AT1G27970 181 / 4e-60 NTF2B nuclear transport factor 2B (.1.2) AT1G11570 120 / 8e-36 NTL NTF2-like (.1.2) AT5G48650 40 / 0.0002 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT5G60980 38 / 0.001 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037033 [exp] 207 / 3e-70 AT1G27970 231 / 5e-80 nuclear transport factor 2B (.1.2) Lus10032033 [exp] 192 / 2e-64 AT1G27970 227 / 1e-78 nuclear transport factor 2B (.1.2) Lus10035202 [exp] 189 / 2e-63 AT1G27310 184 / 1e-61 nuclear transport factor 2A (.1) Lus10020061 [exp] 115 / 9e-34 AT1G11570 171 / 3e-56 NTF2-like (.1.2) Lus10006762 [exp] 113 / 2e-33 AT1G11570 130 / 2e-40 NTF2-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057500 [exp] 188 / 6e-63 AT1G27970 228 / 4e-79 nuclear transport factor 2B (.1.2) Potri.003G170800 [exp] 185 / 1e-61 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2) Potri.011G025500 [exp] 126 / 4e-38 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.010G157800 [exp] 42 / 5e-05 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.008G096700 [exp] 41 / 7e-05 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.017G094600 [exp] 40 / 0.0001 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 39 / 0.0006 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10015772 pacid=23167669 polypeptide=Lus10015772 locus=Lus10015772.g ID=Lus10015772.BGIv1.0 annot-version=v1.0 ATGAATCCAGACGCAGTGGCCAAGGCATTCGTAGATCACTACTACAGTACTTTCGACACCAACCGAGCTGGACTGGCTAACCTTTACCAGGATGGCTCCA TGCTCACCTTCGAAGGCCAGCAGATCCAGGGCTCCCAAAACATAGTCGCTAAGCTTACGAGCCTTCCTTTCCAGCAGTGCCAGCACAGCATCACCACCGT CGATTGCCAGCCCTCTGGTCCTGCCGGCGGGATGCTTGTCTTCGTCTCTGGTAACCTCCAGCTCTCCGGGGAACAGCATGCTCTCAAGTTTAGCCAGGTC ATATTGAAGAACAATGCGGATTTCTTACTAGTTGTGATATCAGATCTTACAATTTGTTTTTGCGACCTCGAGATCTCGGATCTTATGTCTAGCTTTGCAA GCTTCGATAAATGA
AA sequence Show only first row Show all	>Lus10015772 pacid=23167669 polypeptide=Lus10015772 locus=Lus10015772.g ID=Lus10015772.BGIv1.0 annot-version=v1.0 MNPDAVAKAFVDHYYSTFDTNRAGLANLYQDGSMLTFEGQQIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLSGEQHALKFSQV ILKNNADFLLVVISDLTICFCDLEISDLMSSFASFDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	0	1
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10011851 [exp]	6.2	0.8375
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	6.9	0.8022
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	8.8	0.8339
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	10.0	0.8372
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	12.0	0.7968
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	12.2	0.7953
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	15.1	0.7872
AT4G10810			unknown protein		Lus10023038 [exp]	17.5	0.8178
AT1G65270			unknown protein		Lus10020224 [exp]	17.5	0.7904
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	17.5	0.8247

Compare expression of checked genes

Lus10015772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.