Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27320 1332 / 0 AHK3 histidine kinase 3 (.1) AT5G35750 996 / 0 AHK2 histidine kinase 2 (.1) AT2G01830 926 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 149 / 3e-36 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 136 / 2e-32 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G66340 130 / 6e-31 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 115 / 7e-26 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 113 / 1e-25 ERS1 ethylene response sensor 1 (.1) AT3G04580 70 / 7e-12 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 64 / 5e-10 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037032 [exp] 1476 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10012325 [exp] 964 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 950 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10030772 [exp] 912 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 905 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 882 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 880 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10026917 [exp] 201 / 7e-53 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10041891 [exp] 139 / 4e-33 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171000 [exp] 1436 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 1380 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 1028 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 943 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 939 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.007G056400 [exp] 136 / 3e-32 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 131 / 9e-31 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.018G011400 [exp] 129 / 3e-30 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.003G032300 [exp] 128 / 5e-30 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 124 / 5e-29 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10015773 pacid=23167646 polypeptide=Lus10015773 locus=Lus10015773.g ID=Lus10015773.BGIv1.0 annot-version=v1.0 ATGAGTTTGCTCCATGTTCTTGCCTTTGGTTTAAAAGCTGGGCATCTCCTTTGGTTACTATGCTGCTGGATTGTCACTGTAATTCCTCTCAACAGCTTCA TCCAAAGTGGAATTAAGCCATCCCATTCTGGTGATTTACTTGGTCATGCTGTGAAATTGTGGGAGAAGATGTCTGAGAAGAGTTGCGAGATCCACCACCA TCATTACTATCAGTACATTTTGTTGAAGTTGGTGAGGAAATCATGGTGGAGAAAGTTTGTGGCCGGGTGGGTAATTTGCTGGATCATGATTTGTTCAAGT CTACTTTTCTACATGAACAATCTAGCCGTGGAGTCTAGGAAAGCCACACTTGCTAGCATGTGTGATGAGAGAGCTAGGATGTTGCAGGATCAGTTTAATG TTAGCATGAACCATGTTCAAGCCATGTCTATCTTGATCTCTACTTTTCACCATGGCATGAGTCCTTCTTCCATTGATCAGAAAACATTTGCGAAGTACAC AGAAAGAACAAACTTTGAGAGGCCGCTGACAAGTGGGGTGGCATATGCTGTGAGGGTGCTCCATTCTGAAAGGGAGAAGTTTGAGAAGCTACAAGGGTGG ACCATAAGGAGGATGGATACTTTTGAGCAAAACCCAGTTCATAAAGACGATCATATACCAGAAAAATTGGAGCCATCTCCAATCCAGGAAGAATATGCTC CCGTGATCTTTGCACAAGATACCGTTGCCCATGTCGTCTCCCTTGATGTGCTGTCTGGAAAAGAAGATAGGGACAATGTGCTAAGAGCTAGAGAATCTGG GAAAGGGGTCCTAACTGCTCCTTTTAGGCTCTTGAAAACCAATCGTCTCGGTGTAATTTTGACATTTGCTGTCTATAAAAGAGAACTCCCGCTCAATGCA ACTCCAAAGGAGAGGATTCAGGCTACTGATGGGTATCTAGGGGGTATCTTTGACATTGAGTCACTAGTCGAGAAGTTACTCCAACAACTTGCAACCAAAC AAACTATCCTGGTGAATGTATATGACACAAGTAACCAATCCCACCCGATCAGTATGTATGGCTCAGATGAGTACGTTGATCGGTTGGAGCATGTCAACAG TCTTAACTTTGGCGATCCCTTTCGAAACCATGAGATGCGATGCAGATTCAAGCAAAAAGCACCGTGGCCTTTGATGGCAATAATGACTTCCCATGGCATC CTTGTGATTGTTTTGCTCTGTAGTTCTTTAATCAATGGAACCATCAAGCGCATTGCTGAGGTAGAAGACGATCGCGATGAGATGAGAGAGCTAAAGAAAA GGGCTGAGGCTGCTGATGTAGCCAAGTCTCAATTTCTTGCTACAGTCTCTCACGAGATCAGGACCCCGATGAATGGTGTATTAGGGATGTTAGACATGCT TATGGACACTGATCTAGATGTTACTCAGCAAGACTATGTCCGAACTGCACAGGGAAGTGGGAAAGCTCTTGTCTCACTTATCAATGAGGTGCTGGATCAG GCCAAAATTGAGTCGGGCAAGCTTGATCTAGACGCTGTTCAGTTTGATCTTCGACAAATTATGGATGATGTTCTGTCTCTTTTCTCCGGGAAGTCTCAGG AGAAAGGGGTTGAGTTGGCAGTTTACATCTCGGACCGTGTTCCTGATATGCTCATCGGCGATCCTGGAAGGTTTCGGCAAATCATCACCAATCTCATGGG AAACTCTATAAAATTCACTGAAAAGGGACACATTCTGGTTACTGTTCATCTTGTGGAGGAAGTGATAGACTCCATAGACATTGAGACAGAAGCATCATCA AGGAACACATTGAGTGGCTTTCCTGTAGCGGATAAACGGAGTAGCTGGGCAGAATTCAGATCATTCAACAAAGATTCATCTAAATCTAACTGCTCCTCTC CTGACCTTATCAACCTAATTATTTCAGTGGAAGATACAGGAGAAGGCATCCCTCAAGAGGATCAGCCTCGTATCTTCACACCTTTCGTTCAGGTCGGTCC ATCGATTTCGAGAAAACAAGGAGGCACGGGGATTGGCCTCAGCATTAGCAAGTGTTTAGTAACCCTCATGAATGGAGAAATCGGGTTCGTTAGCATACCG AAGATCGGTTCCACCTTCACATTCACTGCTGTTTTCACAAACGACCTCAAGAGCCAGAAAATCAACCAATCCAGCTTCCCTCCGGAGTTTCAAGGCATGA GAGCCTTGGTTGTGGACTCTAGACCGGCGAGAGCAAAGATATCGAGATACCATGTCCAGAGACTTGGGATTCAAGTCGAACTCATTCCTACGTTGAGCCA AGCTTTGTCTAATATTATAACCACAGGGAACATAGTTGTTAGCATGGTTCTCGTTGAACAGGATGTTTGGGATGCTGAGTCAAGCAGTTCATCCCTATTT GTCAACAGCTTAAGGAAACTTGACCACCAAGTTTCCCCAAGGCTTTTCATCCTTGCTAATTCGGCCAGCTCTCTCAGGACAGGAACCCTAACTTCTGGTC TTTATGCACCGAGTATCATCGTGAAGCCATTGAGGTCGAGTATGCTGGCTTCTTCTCTACAACGAGCAATGGGAGTTGGGAACAAACCGAATCCTCGAAA CGGGGAGCTCCTACCACTTCGGAGCTTGCTTGCTGGAAGAAAGATTCTCATTGTGGATGATAATTACGTGAACCTCAAGGTAGCTACTGGTGCCTTGAAA AAGTATGGAGCTGATGTTGTCTCTGCCGAAAGCGGTCCGAAGGCTATTTCTTTCCTTGAGCCTCCTCATACCTTTGATGCATGCTTCATGGACATCCAGA TGCCTGAAATGGATGGCTTTGAAGCCACGAGAAGGATCAGAGAAATGGAACTTCGCATGAACGAACGAATTAAAAACGGAGACGTACCGATTGAATCATG TCGAGATGTTTCGAACTGGCACATACCAATTTTGGCAATGACTGCAGATGTTATCCAGGCTACACACGAGGAATGTACACGATGTGGCATGGATGGATAT GTTTCGAAACCATTTGAAGCTCAGCAGTTGTATCAGGAAGTTTCGCGATTTTTTACAAGTTAA
AA sequence Show only first row Show all	>Lus10015773 pacid=23167646 polypeptide=Lus10015773 locus=Lus10015773.g ID=Lus10015773.BGIv1.0 annot-version=v1.0 MSLLHVLAFGLKAGHLLWLLCCWIVTVIPLNSFIQSGIKPSHSGDLLGHAVKLWEKMSEKSCEIHHHHYYQYILLKLVRKSWWRKFVAGWVICWIMICSS LLFYMNNLAVESRKATLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGMSPSSIDQKTFAKYTERTNFERPLTSGVAYAVRVLHSEREKFEKLQGW TIRRMDTFEQNPVHKDDHIPEKLEPSPIQEEYAPVIFAQDTVAHVVSLDVLSGKEDRDNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPLNA TPKERIQATDGYLGGIFDIESLVEKLLQQLATKQTILVNVYDTSNQSHPISMYGSDEYVDRLEHVNSLNFGDPFRNHEMRCRFKQKAPWPLMAIMTSHGI LVIVLLCSSLINGTIKRIAEVEDDRDEMRELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQGSGKALVSLINEVLDQ AKIESGKLDLDAVQFDLRQIMDDVLSLFSGKSQEKGVELAVYISDRVPDMLIGDPGRFRQIITNLMGNSIKFTEKGHILVTVHLVEEVIDSIDIETEASS RNTLSGFPVADKRSSWAEFRSFNKDSSKSNCSSPDLINLIISVEDTGEGIPQEDQPRIFTPFVQVGPSISRKQGGTGIGLSISKCLVTLMNGEIGFVSIP KIGSTFTFTAVFTNDLKSQKINQSSFPPEFQGMRALVVDSRPARAKISRYHVQRLGIQVELIPTLSQALSNIITTGNIVVSMVLVEQDVWDAESSSSSLF VNSLRKLDHQVSPRLFILANSASSLRTGTLTSGLYAPSIIVKPLRSSMLASSLQRAMGVGNKPNPRNGELLPLRSLLAGRKILIVDDNYVNLKVATGALK KYGADVVSAESGPKAISFLEPPHTFDACFMDIQMPEMDGFEATRRIREMELRMNERIKNGDVPIESCRDVSNWHIPILAMTADVIQATHEECTRCGMDGY VSKPFEAQQLYQEVSRFFTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10015773 [exp]	0	1
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	1.0	0.9065
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	8.1	0.8276
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	9.8	0.8316
AT3G45830			unknown protein		Lus10018121 [exp]	11.7	0.8374
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	15.5	0.8059
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	17.4	0.8174
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	17.9	0.8119
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	19.3	0.8030
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	20.1	0.8187
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	20.5	0.8149

Compare expression of checked genes

Lus10015773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.