Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 599 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 122 / 2e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 119 / 4e-29 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 104 / 3e-24 F-box family protein (.1) AT3G61590 92 / 4e-20 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 79 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 64 / 4e-11 F-box family protein (.1) AT3G49980 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT1G12870 60 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT3G17490 59 / 4e-09 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037030 [exp] 845 / 0 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10011354 [exp] 225 / 8e-71 AT1G27340 187 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003117 [exp] 187 / 4e-58 AT1G27340 165 / 7e-50 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003118 [exp] 137 / 9e-39 AT1G27340 115 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 132 / 9e-34 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 131 / 4e-33 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 110 / 4e-26 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 102 / 2e-23 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10003029 [exp] 90 / 2e-19 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171300 [exp] 708 / 0 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 681 / 0 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 135 / 3e-35 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.004G112400 [exp] 134 / 8e-35 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 129 / 5e-33 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 125 / 2e-31 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G160900 [exp] 120 / 1e-29 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G118700 [exp] 104 / 1e-24 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 100 / 4e-23 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 94 / 1e-20 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10015775 pacid=23167639 polypeptide=Lus10015775 locus=Lus10015775.g ID=Lus10015775.BGIv1.0 annot-version=v1.0 ATGAACTTCCCTGCTTGTGTTTCAAGGGATTCATGGACTACTCATTTCAACATTACTAGCTGCAAGCCTGCAGTGCAGCATCTTTCATGTTGCATCCTCA ATGTGGACGATGGGTCTGCAGATGATTACTGTGGTCTGATGATGGAGTCTGGAAAGTCCGAAACTTTCACAATGTTGGAACCCAGCAACCCTCCACCCAC AAAGAAATGTAGAAAAGAGCGTGGTCGAGGCAAATTTCCTTGCTCTACTAGCACAACAGAGGTGATGGAGGCAGAAATCTGGAAGGATTTCCCAGAAGAT CTATTTGAAGCTGTCATCGCCAGACTACCAGTTGCCACGTTCTTCCGCTTCCGCTCAGTCTGCCAGAAATGGAATTCCTTGCTTAATTCCGAGAGCTTCT CCCAGCATTCTGCACAAATTCCACGAACCAATCCTTGGTTCTACACCATCACGCACGAAAACGTGAATTCTGGAGCCATGTATGACCCTCACTCAAAGAA ATGGTACCACCCGACGATTTCTTCTCTTCCCACTAAGATGATCATCTTGCCAGTTGCTTCAGCAGGGGGGCTTGTGTGTTTCCTCGATATCGGTCACCGC AACTTTTACGTCTGCAACCCTCTGACCAGTTCGTTCCGAGAGTTACCTGCCCGGTCGGTTAAAGTCTGGTCTCGGGTAGCCGTCGGGATGACTTTCAACT GGAATGCTGGAAACGGGGCGTATAAGATTCTATGGGTGGGTTGTGATGGTGAGTATGAAGTGTACGACTCGGTGATTAACTCGTGGACTCATCCCGGTAT CATGCCGTCCCACATCAAGCTGCCTTTATCACTCAACTTCCGCTCGCAAGCAGTATCGATCGACAACGTGCTTTACTTCATGCGTTCGGAGCCCGAGGGA ATAGTGTCGTATGATATGGTTTCCGGGGTGTGGAAGCAGTTTGCGATACCAGATCCGCTCCATCTGAGCGATCACACGCTAGCTGAATGCTCGGGGCGGA TCATTCTGGTCGGGTTGCTGACTAAAAATGCGGCCACGTGCGTTTGCATATGGGAGCTGCAGAGGATGACGCTCTTGTGGAAGGAGGTAGACAGAATGCC AAACTTATGGTGCTTGGAATTTTACGGGAAGCACGTCAGGATGACTTGTCTGGGCAACAAGGGTTTGCTCATGCTGTCATTGAGGTCGAGACAGATGAAC CGGTTGGTTACGTACGATGTGGCGAGTAAAGAGTGGAACAAGGTTCCTGGTTGCTTGGTTCCTCGAGGGAGAAAGAGGCAGTGGATTGCTTGCGGAACGG CATTCCACCCTTCCCCTACTGCTATGGCTTGA
AA sequence Show only first row Show all	>Lus10015775 pacid=23167639 polypeptide=Lus10015775 locus=Lus10015775.g ID=Lus10015775.BGIv1.0 annot-version=v1.0 MNFPACVSRDSWTTHFNITSCKPAVQHLSCCILNVDDGSADDYCGLMMESGKSETFTMLEPSNPPPTKKCRKERGRGKFPCSTSTTEVMEAEIWKDFPED LFEAVIARLPVATFFRFRSVCQKWNSLLNSESFSQHSAQIPRTNPWFYTITHENVNSGAMYDPHSKKWYHPTISSLPTKMIILPVASAGGLVCFLDIGHR NFYVCNPLTSSFRELPARSVKVWSRVAVGMTFNWNAGNGAYKILWVGCDGEYEVYDSVINSWTHPGIMPSHIKLPLSLNFRSQAVSIDNVLYFMRSEPEG IVSYDMVSGVWKQFAIPDPLHLSDHTLAECSGRIILVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNLWCLEFYGKHVRMTCLGNKGLLMLSLRSRQMN RLVTYDVASKEWNKVPGCLVPRGRKRQWIACGTAFHPSPTAMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27340			Galactose oxidase/kelch repeat...		Lus10015775 [exp]	0	1
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	7.7	0.6126
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	22.1	0.6199
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10035082 [exp]	34.7	0.6087
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	56.4	0.6065
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	69.3	0.4906
AT1G10380			Putative membrane lipoprotein ...		Lus10037235 [exp]	108.4	0.5300
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	113.7	0.5224
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	116.7	0.5367
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	122.5	0.5355
					Lus10019699 [exp]	221.8	0.4899

Compare expression of checked genes

Lus10015775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.