Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 193 / 7e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006412 [exp] 242 / 2e-79 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10011357 [exp] 245 / 1e-78 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 181 / 4e-56 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172500 [exp] 245 / 2e-80 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.001G056000 [exp] 231 / 6e-76 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.008G085400 [exp] 40 / 0.0009 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10015776 pacid=23167709 polypeptide=Lus10015776 locus=Lus10015776.g ID=Lus10015776.BGIv1.0 annot-version=v1.0 ATGGACAACAGAAATTCTTCAGCGACCAAACGGGCTAGAACTGACGGCTCTCGCAGAGAGGATGACTGGACCTGCCCTAGCTGCGGCAATGTCAATTTCT CATTTAGGACAACATGCAATATGCGTAATTGCACCCAACCCAGGCCAGCAGATCACAACTCGAAGTTTGCTGCCAAGCCACTGCAGCCCCCTCAGAATTA CTCTGTTCCGGCTCCCTATGTAGGTTCCGGTGCACCATCTTCAATGTATATGGGTGTACCTCCATATGGGTCTTCTTCTGTGTTCCATGGATCTTCTCTC CCTCCGTATGAGGCTCCATTTCCTGGGGGATCTGCATATCCGTACAATTATGGTAGCCGAATCTCCGGAGGAAGCCCTTATAGGCCACTCCAGATATCCA CACCACCACCTTATTCTGGTGGATCTATGGTGGGGAATGGTGAGTTTTGGCTTCTTTTGTTGAGTTTCAATTTTTACTTTGAGCTTGTCATCATGCTGTG GTCCTCGGAAATACTTCCACTTAAGTTACTATGTCTTTGTAGTCTGAATGGTCTGAATATTCATATTTCAGCCTTTTGTACTTTCTCTTATTTCAGGTGG TATGTATGGAATGCCCCCCTTGATGGACCGCTATGGGTTAGGCATGCCAATGAGCCCTGCTGCTATGGTATGTTAAGCCTTCCGGAATCAGTAGTAGCTT TTGAAGACTTGGTACACTAA
AA sequence Show only first row Show all	>Lus10015776 pacid=23167709 polypeptide=Lus10015776 locus=Lus10015776.g ID=Lus10015776.BGIv1.0 annot-version=v1.0 MDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKFAAKPLQPPQNYSVPAPYVGSGAPSSMYMGVPPYGSSSVFHGSSL PPYEAPFPGGSAYPYNYGSRISGGSPYRPLQISTPPPYSGGSMVGNGEFWLLLLSFNFYFELVIMLWSSEILPLKLLCLCSLNGLNIHISAFCTFSYFRW YVWNAPLDGPLWVRHANEPCCYGMLSLPESVVAFEDLVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10015776 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10004257 [exp]	13.0	0.8366
					Lus10007204 [exp]	13.5	0.8665
AT1G58230			binding (.1)		Lus10042867 [exp]	24.0	0.8484
AT1G58230			binding (.1)		Lus10028167 [exp]	28.6	0.8392
					Lus10037828 [exp]	29.3	0.8014
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	35.4	0.8346
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10015033 [exp]	41.0	0.8270
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	51.8	0.8233
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	82.5	0.7764
AT1G65780			P-loop containing nucleoside t...		Lus10013768 [exp]	94.7	0.7901

Compare expression of checked genes

Lus10015776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.