Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13060 100 / 7e-23 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G27960 46 / 3e-05 ECT9 evolutionarily conserved C-terminal region 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037028 [exp] 633 / 0 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 217 / 1e-67 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 96 / 2e-21 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 94 / 1e-20 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056100 [exp] 224 / 2e-68 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 148 / 1e-39 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 137 / 8e-36 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015777 pacid=23167633 polypeptide=Lus10015777 locus=Lus10015777.g ID=Lus10015777.BGIv1.0 annot-version=v1.0 ATGGGTGGTTCCTTCAATTTTCAGTCCCCTTTGGGTACAGATGGGATCATGGTTGATTCTTCGCAGGCTGCTGTTAGTGTTGCTTCTTTCAGGGATGATA CTTCACTAAATGCATGCTCATCTCAGGCGCAGGCTGCTTATCATAGAGGTTATGATGGAATGAGTAGCCGATTTGGAGTTCATCTTTCTGATGGTAACGT TGAAAGCCTGGAAAATGGTGTTCATGGCATCCATGATGACTTCTCTCTTCCATTCCATGGATATGATTATGGATCTCAAATGCCTCAGAGACAGTACATG CCGGTTCAATCATCTTATGATGTCCCATTCTACAATGTGCACGAGTTCCCTAATGCCAGTCAACCTTATTTCCAGCAGCATATCTCACATAATGCTCAAC ATGTTGCATCACCAATCCCAGTTTCTGAACTTCAATTGCCAGCCCACTCTGATCACCAAGTAGGATGCTATAGGTATGATCCTAGACTGGGCCAACCACA CAATTTGGGGTTTTCGGGTGAACGAAACAACTTTCCTGGGATGATGGGACAGTCTGCGCCCTTGCAAGGATTTGATGGCATCGAAGGTCATAGATTATGG TCGGACTGGTCAAAGCCCGTCAATGGTACAAACTCTTTTGTGCACTTGTCGTCACCATCTTGTGCCAAACCAGCGGGTGCAGTTGGTTTCCCTGAGAATC ATTTTGCAACGGGTTCTCGTCATAGAGACTCATTTTATGACTTCGGATCCCATTCAAATTCTAGATATGAAACCTATCCTCAAGTACAAAATGACCTGGA CTCTGGCTATGAAGTTTCTCTTCTCAGGATGAATTGCAGAAACTTTCCCACCCTTGATGAAGCAAGGGTCGGGGGAAGGTGCAATGATTTCTCATGCAGC TGTACTGTTGCCCTGGACACACTTAGTGAGCGAAACAAGGGACCTAGGGCATTTAAGCCCAGAAATCAGACACTAGGGAAAGAAACAATGGGTGACATTC AGAGGACTGCCATAAGTGATGGCGCTGCTACATCACTTTAG
AA sequence Show only first row Show all	>Lus10015777 pacid=23167633 polypeptide=Lus10015777 locus=Lus10015777.g ID=Lus10015777.BGIv1.0 annot-version=v1.0 MGGSFNFQSPLGTDGIMVDSSQAAVSVASFRDDTSLNACSSQAQAAYHRGYDGMSSRFGVHLSDGNVESLENGVHGIHDDFSLPFHGYDYGSQMPQRQYM PVQSSYDVPFYNVHEFPNASQPYFQQHISHNAQHVASPIPVSELQLPAHSDHQVGCYRYDPRLGQPHNLGFSGERNNFPGMMGQSAPLQGFDGIEGHRLW SDWSKPVNGTNSFVHLSSPSCAKPAGAVGFPENHFATGSRHRDSFYDFGSHSNSRYETYPQVQNDLDSGYEVSLLRMNCRNFPTLDEARVGGRCNDFSCS CTVALDTLSERNKGPRAFKPRNQTLGKETMGDIQRTAISDGAATSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	1.4	0.9006
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	2.2	0.8839
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	4.1	0.9034
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	6.0	0.8820
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	7.5	0.8816
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	10.2	0.8597
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	11.5	0.8868
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	11.7	0.8549
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	13.4	0.8709
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	14.4	0.8853

Compare expression of checked genes

Lus10015777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.