Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67330 381 / 3e-134 Protein of unknown function (DUF579) (.1) AT1G27930 369 / 3e-129 Protein of unknown function (DUF579) (.1) AT1G71690 240 / 1e-78 Protein of unknown function (DUF579) (.1) AT1G09610 238 / 8e-78 Protein of unknown function (DUF579) (.1) AT4G09990 234 / 3e-76 Protein of unknown function (DUF579) (.1) AT1G33800 226 / 6e-73 Protein of unknown function (DUF579) (.1) AT5G67210 171 / 2e-51 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT2G15440 170 / 5e-51 Protein of unknown function (DUF579) (.1) AT3G50220 167 / 1e-49 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT4G24910 152 / 3e-44 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037026 [exp] 588 / 0 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 458 / 2e-164 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 429 / 7e-153 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 313 / 3e-107 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 229 / 2e-74 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 228 / 6e-74 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 227 / 3e-73 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 169 / 8e-51 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 166 / 9e-50 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172300 [exp] 414 / 3e-147 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 413 / 7e-147 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 232 / 2e-75 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 232 / 3e-75 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 230 / 9e-75 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 228 / 5e-74 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 189 / 1e-58 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.015G096900 [exp] 182 / 8e-56 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 182 / 1e-55 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 177 / 6e-54 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10015780 pacid=23167718 polypeptide=Lus10015780 locus=Lus10015780.g ID=Lus10015780.BGIv1.0 annot-version=v1.0 ATGAAATCCCGACGCCTCCTGCCGGAGAAATCATGGATCCTTGCTGTGATAATGGCCGGACTCGTGTTCGTCGGAGTACTAATCGGCAGCTTCATCAGAT CCGCTGACACCTCCTTCATCTGCTCCCTGGCCAGCGAGAAATTCCGCGCCGCACAAGACTACGCCTCCACTCCCCAACAGCTCCAAGCCATCGTCCACTA CGCCACCTCCCAAACAACCCCTCAGCAAAACTTCCGCGAGATCTCGATCACTTTAGACGTCCTCAAGCGCCGTTCCCCTTGCAACTTCCTCGTCTTCGGC CTCGGATTCGATTCCCTGATGTGGAGCTCCCTCAACCCGCGCGGCCGCACGATCTTCCTCGAGGAAGACCCCGCGTGGGTGAAATCGGTACTCAAAGACG CGCCCACGCTCGACGCCTACACCGTCCAGTACCGTACGCAGCTCAAGGAAGCAGATCTGCTCCTCAAATCGTACAGGAAGGAGCCTCTCTGTTCTCCGAG CAAGGCCTATCTGAGGGGGAATTACAAGTGTCCTTTGGCGCTGACGGGGCTTCCAGAGGAAGTTTACGAGAAGGAGTGGGATGTGATTATGGTCGACGCG CCGAGAGGGTGGTTCCCCGAGGCGCCTGGTCGTATGGCAGCGATTTTTTCGGCCGCGGTTATGGCGAGGGCGAGGAAGGGACCCGGTGTGACGCACGTGT TCCTGCACGATGTGGATCGGAAGGTGGAGAAGACGTTTGCGGAGGAGTTTCTTTGTAGGAAGTATTTGGTTAAGGGAGTCGGGAGGCTGTGGCATTTCGA GATCCCGCCGGCGGCGAATATGACCGGCCAGGATGAAAACTCGTGGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10015780 pacid=23167718 polypeptide=Lus10015780 locus=Lus10015780.g ID=Lus10015780.BGIv1.0 annot-version=v1.0 MKSRRLLPEKSWILAVIMAGLVFVGVLIGSFIRSADTSFICSLASEKFRAAQDYASTPQQLQAIVHYATSQTTPQQNFREISITLDVLKRRSPCNFLVFG LGFDSLMWSSLNPRGRTIFLEEDPAWVKSVLKDAPTLDAYTVQYRTQLKEADLLLKSYRKEPLCSPSKAYLRGNYKCPLALTGLPEEVYEKEWDVIMVDA PRGWFPEAPGRMAAIFSAAVMARARKGPGVTHVFLHDVDRKVEKTFAEEFLCRKYLVKGVGRLWHFEIPPAANMTGQDENSWFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	0	1
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	1.4	0.9442
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	3.2	0.9309
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	3.5	0.9209
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	3.7	0.9193
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	5.1	0.9416
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	5.5	0.9335
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	6.6	0.9228
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	8.7	0.9193
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	10.2	0.9208
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	11.5	0.9137

Compare expression of checked genes

Lus10015780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.