Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27385 148 / 6e-42 unknown protein AT5G51920 87 / 7e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 81 / 5e-16 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 80 / 8e-16 unknown protein AT2G23520 80 / 1e-15 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 76 / 2e-14 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037025 [exp] 579 / 0 AT5G51920 86 / 3e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 377 / 5e-129 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 375 / 4e-127 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10037024 [exp] 282 / 1e-93 AT1G27385 250 / 3e-85 unknown protein Lus10006342 [exp] 92 / 2e-19 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 89 / 1e-18 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 89 / 1e-18 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 83 / 1e-16 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 79 / 4e-15 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172100 [exp] 431 / 1e-149 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 385 / 7e-132 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 383 / 7e-131 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 206 / 2e-64 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056500 [exp] 176 / 3e-52 AT1G27385 187 / 3e-60 unknown protein Potri.003G172000 [exp] 164 / 8e-48 AT1G27385 204 / 9e-67 unknown protein Potri.001G111600 [exp] 91 / 3e-19 AT4G22980 431 / 2e-144 unknown protein Potri.015G137900 [exp] 91 / 3e-19 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G120500 [exp] 89 / 1e-18 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 79 / 3e-15 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015781 pacid=23167626 polypeptide=Lus10015781 locus=Lus10015781.g ID=Lus10015781.BGIv1.0 annot-version=v1.0 ATGGCGTGCAGAGCAGTTTTACGCTCCGTCTTCGTAACAGAGCCATGGAGACCACTGTATCAGACTCGGCGGCTCTACAGTTTTCCGGCGACGAACGTCG AGTTCTCGATTTCCGGACTGTATAATAGAAGCGTAAGGCACCGTCGACGATTTCACTCCGGCAAGCTGAATCATTTGAATTGCTCGCATACCAGTGGTGT CCCGGAGGCTGAAGATGAGCATGAAGATCAAGAGCCGCCGCAGGAAGCTGTGTTGAAAGCTATTTCAGAAGTGTCGAAGACGGAAGGGAGAGTGGGACAT ACTACGAATGTAGTAATTGGTGGCACGGTGGCTGATGATTCGACTAACGAATGGCTTAATTTGGATAAGAAGGTTAATACGTATCCTACGGTTAGAGGGT TTACTGCCATTGGAACTGGAGGTGATGATTTCGTTCAAGCTATGGTGTTTGCTGTTGAATCTGTGATTCAACAGCCTATTCCCCAGAAGGCACATTCAGT AATCCCAGCCCACTTAATAGCGGAAGCAATCTCAACACTACGAGGACTGGACCTAAGATGGTCAGGACCCATCACCCCAACCGAAATGGACTACGTCAAA CAATACGTCCTCGCCAAGTACCCACAATATTCGAACGGGATCGTCGAAGACCACCACCCCGAACCAACCACAACTGAACCAAAAACCGAACCATCTTCCA AAACAACATCCCCATCATCAACAACTCCCTCATTCAGCCGGAGCTTCTCTGACCTGGACCGGACCCAACTCTCGCAATCCCGGCTCCTTGACATCCTGAC GAAGAAGACGTCGTTCCAGGGCAACTTCATCTCGATCCCGGAAATACAGGGCCGGAACAGAGCGCTCAAGCACTGCGGGTTGAGTGAAAGGGACTATTTG GTCATTTTCATGCCGAGTTATAAAGATGCCTTGACTATGGTCGGGGAGAGCTACCCGTTTTGTAAGGGGAATTATTACATGACTATTGTCGGGGAGGAAG TTGACGGCGGGGTGAGGAATATGGCGGCGGGGAAGGAAGCGAAAGTTGTGCCGATGCCGGAGAGTTGGCTTGACTTGAGGATCAAAGGGTCGCAGCTGAG TCAGTATTTTAGGAGGAAATGTAAGAGTGTTCCTAAGGGGCTGTTTGCTTATCCTGCTGATCTCAACGGTACCAGGTATTCGATGCATTGGATATCGGAG GCGCACCGAAACTCGTGGCATGTATTGCTGGACGCGACGGGGCTGGTTTTTGGGGAAGAGAGGCTGAACTTGGCGCTGCATAGGCCGGACTTTGTGGTGT GTGGGTTGGAGAATAACGGCGGGAGTGGGCATGGCTTTGTGGACAACGGTGGCCAGCAGATGATCTCCAACATTGCTTGCCTTTTGGTTAGGAAAGACTC CTTTGATACTTCTTCTTCTGAATAA
AA sequence Show only first row Show all	>Lus10015781 pacid=23167626 polypeptide=Lus10015781 locus=Lus10015781.g ID=Lus10015781.BGIv1.0 annot-version=v1.0 MACRAVLRSVFVTEPWRPLYQTRRLYSFPATNVEFSISGLYNRSVRHRRRFHSGKLNHLNCSHTSGVPEAEDEHEDQEPPQEAVLKAISEVSKTEGRVGH TTNVVIGGTVADDSTNEWLNLDKKVNTYPTVRGFTAIGTGGDDFVQAMVFAVESVIQQPIPQKAHSVIPAHLIAEAISTLRGLDLRWSGPITPTEMDYVK QYVLAKYPQYSNGIVEDHHPEPTTTEPKTEPSSKTTSPSSTTPSFSRSFSDLDRTQLSQSRLLDILTKKTSFQGNFISIPEIQGRNRALKHCGLSERDYL VIFMPSYKDALTMVGESYPFCKGNYYMTIVGEEVDGGVRNMAAGKEAKVVPMPESWLDLRIKGSQLSQYFRRKCKSVPKGLFAYPADLNGTRYSMHWISE AHRNSWHVLLDATGLVFGEERLNLALHRPDFVVCGLENNGGSGHGFVDNGGQQMISNIACLLVRKDSFDTSSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27385			unknown protein		Lus10015781 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	1.0	0.9237
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	3.7	0.9216
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	4.2	0.9124
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	4.9	0.8908
					Lus10025501 [exp]	8.0	0.9179
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	8.1	0.9179
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	9.9	0.9063
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	12.0	0.9141
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	12.7	0.8968
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	14.7	0.8976

Compare expression of checked genes

Lus10015781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.