Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11780 383 / 3e-133 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT3G14160 52 / 3e-07 2-oxoglutarate-dependent dioxygenase family protein (.1) AT5G01780 48 / 6e-06 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14140 42 / 0.0004 2-oxoglutarate-dependent dioxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037023 [exp] 556 / 0 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10025260 [exp] 47 / 9e-06 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 45 / 2e-05 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10033471 [exp] 43 / 0.0002 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171900 [exp] 447 / 3e-158 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.016G132300 [exp] 47 / 1e-05 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015782 pacid=23167662 polypeptide=Lus10015782 locus=Lus10015782.g ID=Lus10015782.BGIv1.0 annot-version=v1.0 ATGTACAGATCCGATAGCCTCGCCGAGGAAGCGGCGGAGCATTCGGCGTTTAAGAGAGCGGAGAAGAAGTACAAGCTGTATTACGACCAGTCCTCTAAAA AGAAGAAGAAGCCGAAACCAGTCGATTTATCGGGGGTTCTGGATTTCGATTCGATTTTCAACTCATTCAATAATAACGAAGAGCTTCCTCATGGAATCGC CGCTGTTCAATGCCACGGCTTCGGTCGCCCTGTTTTCCGCCTGGAAAGTCGTCCCGGATTTTATTTCCTTCCTGGAGCACTGAGTGTAGAAGAGCAATGC CTGTGGATAAGAGAGGGGTTAACGAGCTTTCCTCAGCCTCCTAATAGAACCAATCATAACGCCATCTACGGACCGATCAGTGACCTATTCGATGCAGCAA AAGAAGGGAAAGTACTGTTGGAGGATGTTTGCAGCAATGGAGATGCTCAACTATGGATATTTTGTGATGATGATGTGAGATCAAGAGGGGATGCTTGTAA ATCTGTCTCAGCTTCAGTCCTGTTGCGAAAGTTGCGGTGGAGCACACTTGGCTTGCAATTCGACTGGTCCAAGAGAAATTACAACGTATCTCTACCCCAT AAGAAGATCCCAGAAGCACTGTGCGAGCTAGCTCGAAAGTTGGCTGCTCCTGCAATGCCAATGGGAGATGAGTTCCACCCAGAAGCTGCAATTGTGAACT ATTTCGGTCTAGGTGATACACTAGGAGGCCATCTCGATGATATGGAAGAAGACTGGAGCAAACCTATCGTAAGCATGAGTTTAGGATGCAAAGCTATCTT CCTGCTCGGGGGGAAGTCGAGAGACGACCCTCCATTGGCGATGTTTCTCCGAAGTGGGGATGTTGTCCTAATGGCTGGAGAAGCAAGAGAATGCTTTCAT GGTGTGCCTCGGATCTTCATCGACGAGGGAAATGCTGAAATTACAAGCTTGGAGACACATTTCTCAGAGGAAACCCATATTCTAGACTACATCAGAACAT CAAGAATCAACATCAACATAAGACAAGTGTTTTGA
AA sequence Show only first row Show all	>Lus10015782 pacid=23167662 polypeptide=Lus10015782 locus=Lus10015782.g ID=Lus10015782.BGIv1.0 annot-version=v1.0 MYRSDSLAEEAAEHSAFKRAEKKYKLYYDQSSKKKKKPKPVDLSGVLDFDSIFNSFNNNEELPHGIAAVQCHGFGRPVFRLESRPGFYFLPGALSVEEQC LWIREGLTSFPQPPNRTNHNAIYGPISDLFDAAKEGKVLLEDVCSNGDAQLWIFCDDDVRSRGDACKSVSASVLLRKLRWSTLGLQFDWSKRNYNVSLPH KKIPEALCELARKLAAPAMPMGDEFHPEAAIVNYFGLGDTLGGHLDDMEEDWSKPIVSMSLGCKAIFLLGGKSRDDPPLAMFLRSGDVVLMAGEARECFH GVPRIFIDEGNAEITSLETHFSEETHILDYIRTSRININIRQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	0	1
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	1.7	0.9236
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018897 [exp]	2.2	0.9063
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	2.8	0.9081
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	6.0	0.9068
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	8.3	0.9072
AT3G56210			ARM repeat superfamily protein...		Lus10010218 [exp]	9.5	0.8877
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10032583 [exp]	12.4	0.8850
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	13.1	0.8837
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	13.9	0.8750
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	14.5	0.8923

Compare expression of checked genes

Lus10015782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.