Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 432 / 2e-151 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 365 / 1e-125 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G17110 42 / 0.0007 UBP15 ubiquitin-specific protease 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 516 / 0 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 450 / 5e-159 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 299 / 7e-100 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056800 [exp] 516 / 0 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 497 / 1e-176 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 416 / 3e-145 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 411 / 1e-143 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10015784 pacid=23167629 polypeptide=Lus10015784 locus=Lus10015784.g ID=Lus10015784.BGIv1.0 annot-version=v1.0 ATGGATGTTTGTGTGGAGAAGAGAGTTCTTAAGAGAGGCAAAATCGATTTTGCCGCTGAAGGAGGAGACAGCAACGTTCTGAATGGAAAGAAGAGGCAGA GACTGTCGACGGAAGCGTTCGCCGGCGAGAGTGATATTTTCGATATACTGCCGGACGATCTCGTCATCTCTATTCTCGCCAAGCTTAGTTCCTCTGCTTC TTCTCCTTCCGATCTAATCAACGCTCTGATAACATGCAAGAGATTCAATAGATTGGCAATTCTTCCTCAAGTACTGACGAAGGCTTCTCAGAAAACGTTT GCTATCAGGGCGGCGAACTGGTCGGAATCTGCTCACCGGTTTCTGAAGCTCTGCGCCGACGCCGGGAATGTTGAGGCCTGCTACACTCTCGGCATGATTC GGTTTTACTGTTTGGCAAATCGAGGCAGCGGTGCTTCGTTGATGGCTAAGGCGGCGATTAACTCTCACGCGCGCTCTCTCTACTCACTAGCTGTCATTCA GTTCAACGGAAGCGGTGGCTCCAAGAGCGACAAGGATCTCCGAGCTGGAGTGGCCCTCTGCGCACGCTCCGCCTTCCTCGGCCATATAGATGCGTTGCGT GAGCTCGGCCACTGCCTCCAGGACGGCTACGGCGTCCGCCAGAACGTCGCCGAGGGACGGCGGTTCCTCGTACAGGCCAATGCCAGGGAGCTAGCGGCGG TGCTTTCCAATCCTAACACCAGCGGCCTTTCAACCTCGCGGCCATGGATGACGTGGAACACGCACGCGCACTCAAACCACCGCCTCACCAGCGGCGGAGG CGGTCCTGGATGTCCGCTGCTGAGCGATTTTGGATGTAACGTCCCGGCGCCGGAAGCTCATCCGGCGAGCCAGTTCATGGCTGAGTGGTTCGCTGCACGG AGCGGGTCACTCGAACAAGGTCTCCGGCTGTGTTCACACTTCGGATGCGGTCGGCCGGAGACACGTAAGCACGAGTTCCGTCGGTGCTCCGTTTGCGGGC TGGTGAATTACTGCTCGAGAGCTTGCCAAGCTCTGGACTGGAAGCTGAGGCACAAGGCGGAGTGTGCTCCGGTGGAGCGGTGGGTGGAGGAAGACGGCGA GGGGATGGACATCGACGGTGAAGGTGGCGATAACGGTGACGGAATCGGTGATAGCTAG
AA sequence Show only first row Show all	>Lus10015784 pacid=23167629 polypeptide=Lus10015784 locus=Lus10015784.g ID=Lus10015784.BGIv1.0 annot-version=v1.0 MDVCVEKRVLKRGKIDFAAEGGDSNVLNGKKRQRLSTEAFAGESDIFDILPDDLVISILAKLSSSASSPSDLINALITCKRFNRLAILPQVLTKASQKTF AIRAANWSESAHRFLKLCADAGNVEACYTLGMIRFYCLANRGSGASLMAKAAINSHARSLYSLAVIQFNGSGGSKSDKDLRAGVALCARSAFLGHIDALR ELGHCLQDGYGVRQNVAEGRRFLVQANARELAAVLSNPNTSGLSTSRPWMTWNTHAHSNHRLTSGGGGPGCPLLSDFGCNVPAPEAHPASQFMAEWFAAR SGSLEQGLRLCSHFGCGRPETRKHEFRRCSVCGLVNYCSRACQALDWKLRHKAECAPVERWVEEDGEGMDIDGEGGDNGDGIGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	5.7	0.8950
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	6.8	0.9087
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	8.5	0.8888
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	8.5	0.8691
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	15.6	0.8548
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	19.2	0.8722
AT3G15780			unknown protein		Lus10023132 [exp]	19.6	0.8697
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	23.9	0.8901
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	24.0	0.8629
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	24.1	0.8386

Compare expression of checked genes

Lus10015784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.