Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67370 535 / 0 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) AT1G67360 257 / 2e-79 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) AT4G32200 144 / 9e-35 ASY2 DNA-binding HORMA family protein (.1) AT3G05500 124 / 1e-31 Rubber elongation factor protein (REF) (.1) AT2G47780 115 / 7e-29 Rubber elongation factor protein (REF) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037019 [exp] 900 / 0 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10030933 [exp] 672 / 0 AT1G67370 655 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10040113 [exp] 636 / 0 AT1G67370 626 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10015171 [exp] 134 / 3e-35 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 137 / 5e-35 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10020648 [exp] 131 / 4e-34 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10029892 [exp] 130 / 6e-34 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173200 [exp] 669 / 0 AT1G67370 746 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Potri.001G055201 [exp] 608 / 0 AT1G67370 700 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Potri.001G055300 [exp] 285 / 9e-90 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 263 / 1e-81 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.002G206000 [exp] 140 / 2e-37 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.013G017300 [exp] 138 / 1e-36 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.005G025700 [exp] 138 / 2e-36 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF02301 [flax] [poplar] HORMA HORMA domain CL0651 [flax] [poplar] PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Lus10015786 pacid=23167656 polypeptide=Lus10015786 locus=Lus10015786.g ID=Lus10015786.BGIv1.0 annot-version=v1.0 ATGGTCGTCGCGCAGAAGTTGAAGCAAGCGGAGATCACTGAGCAGGACTCCCTTCTACTGACTCGAAATCTACTGCGGATTGCAATATTCAATATCAGCT ACATCAGAGGTTTGTTTCCGGAGAAATATTTCACGGACAAGAATGTTCCTGCATTAGGCGTCTATGATGCACTACAGCAAAAGTACCTTAAGACGCTTCT GTTCTGTGTCTGCGAGGCAATAGACGGACCTATGATCGAGGAGTATGCATTTTCCTTTAGTTATTCTGATTCTGATAGTCAAGAGGTCTCCATGAACGTT AACCGCATTGGAAACAAGAAAAAGGGAGGAAGCTTCAAGTATAACTCCGTGACAGAGGTTACTCCTAATCAGATGAGGAGTTCGGCTTGTAAAATGGTGC GTACGCTTGTTCAGCTGATGAGAACTCTAGACAAGATGCCAGAGGAGCGCACTATACTGATGAAACTGCTCTACTATGACGATGTGACGCCAGCAGCTTA CGAGCCACCATTCTTCAAAGGGTGCTCAGACGAAGATGTCCATAATTCATGGACTAGAAGTCCTTTAAAGATGGAGGTGAAAAGTGTGCTTGATCCATGT GACGATGAAGATGGAGACATGGAAGACAATGACGTGAGCTTAGGATCAGGTTATTCTGATGAAAGAGACGACTCTTCAGACTCCGATACTGAGATTAATC AATCACAACAAGACCGTTACGTAGTAGCACCAGCTGGAAATCGGCAACCGGAACCAGATGATACTGCCATGGTCGATGAAGATGATACGCAGGATCCTGA AGAAGATGAACAACAACTGGCTAGGGTGAAGGACTGGATTAATAGCTACCACGGAGACACAGTTGAACTGACTGATATTCTCTCGACCTTCACTGATATC TCTGTGGCATTAACTGAAGAAATCGTAGACAAGCTTGTTAAGGAGGGTATTCTATCAAAAGCTGGAACAGATATTTACTGTATTAACAAGACCAAGGTCT CCGACTACGATTTCGATGCAGTTAAAGAGGAAGCGGACGACCTGGCTGTAGGGCTTGGGGATAAAACTCCACGAGTGGATGACCAGTTGTACATGAAGGC TTTGTACCATACACTTCCAATGACCTACGTGACAATTGCAAACCTTCAGAGTAAACTAGGCGGTGGAGCCAGTCTGACTACAATGCGTAAACTTATTACT AAGATGACCAAGGATGGTTACCTTGAAGCCAGAGGCAACCTTAGACTAGGCAAGCGTGTGATCCACTCCATAACGACGGAGAAAAAGCTTCTGGAAGTCA AGAGAGCCCTTCAAATCGATCCGATGGATCTTGACACTAACGAACCACAATCGATGAAGAAAGTGCCACTTGGTGAATTCCCCACGAAAGGGACAGATCA GAGGGACAACAACTCAACATGTGGAGCGCTCCGTTCTGTAGGCTCGGATCTTACCCGCATGAAGCTTCGATCAGATATGAATGAGAACGGTTCAATCCGA ACCGAGCAGACTGTCTCCAAGACAAGGGAGCATGGAAACACCCCTACTAGCAGAGCCGAACCCGTTACTTCTCGAGAGAGTTTCGCTCCAGGCAACGAGG AAGAAGCCATTATCCGCAGCAAATCTACTCAAGACAAGAAGGCCAGGAAAACCAGCATGTGGCCCCAGCAGAAAGAAGAAGTAACCAATCAGTCTTCCGA CTCTCTTACTACCAGGCAAAGTCCGTCCACGTGTCCTTCCCGAACCCTCTACTTTAGCCCAATCCATCAACGACCCCACAAAGAATGTGACCGACTCGAA ACTCCTACGTCATCAAACGTACCATTCACAGCCCTCCGATCTCTCCAACGGTCTCTGATCAAAACCCCAAACCCGATCGATCTCCATTTCCCCCTTGCTA ATAAACCAGCTCGCTTCATAAAAACCCGCGCTGCATCAGCAGATCTTCACAGTGACAACAACCACCAAATCTCAGCAAGAAGAGTTCTTCAATCCAAAGG AGCAAGCTACTCGAACGAAGCAGATTCCCGCGCTGCATCTGTATACTCTTCCGCCATGTCTGAGGTCGAGAACAAGACGAATACCGGTCCGGAACTGAAA CACTTGGGGATCGTGAGGTTGGCCGCGATCAAGACGCTGGTCTGCGTCTCGAATCTGTACGGCTACGCGAAGCAGAACTCTGGACCACTAAGATCCACCG TCGGTAGCGTTGAAAGAACCGTCTCCTCCATCGTCGACCCCGTCTATCGGAAATTCAAAGGAGTTCCTGATAATCTTCTCGTCTTCTTCGATCGGAAGGT GGACGAAGCTGCACACAAGTTCGACAAGCACGCCCCGCCATTGGCAAAGCAAGTAGTCAGCCAAGCCCAATCTCTGGTCCATTCCACGACCGAAAAGGCT CAGAAGCTTTTTGACGAGGCTCGGACCGGAGGTCCACGAGCAGCCTTCTCGTACACCGTGACCGAGACGAAGCAAGTGGTGCTGACTAATTCCGTGAAGG CATGGTGCATTCTCGACAAGTACCCTTCTGTCCACAAGATTGGAGCCAAAGCTCTACCAATTGCTGCTCACTGGTCAGACAAGTACAACCACACTGTTAA AGATTTGAGCCAGAAGGGTTACCCGCTGGTTGGCTATCTACCTCTGGTGCCGATCGACAAGATCGAGAAGACGTTTAAGGAGGAGAAGGACGAAGTGAAG AAAGAAGGGACGAACGGGACTCAACATAAGGCTGATGAGAAAGACTCGTCATCGGATTCGGATTAG
AA sequence Show only first row Show all	>Lus10015786 pacid=23167656 polypeptide=Lus10015786 locus=Lus10015786.g ID=Lus10015786.BGIv1.0 annot-version=v1.0 MVVAQKLKQAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFTDKNVPALGVYDALQQKYLKTLLFCVCEAIDGPMIEEYAFSFSYSDSDSQEVSMNV NRIGNKKKGGSFKYNSVTEVTPNQMRSSACKMVRTLVQLMRTLDKMPEERTILMKLLYYDDVTPAAYEPPFFKGCSDEDVHNSWTRSPLKMEVKSVLDPC DDEDGDMEDNDVSLGSGYSDERDDSSDSDTEINQSQQDRYVVAPAGNRQPEPDDTAMVDEDDTQDPEEDEQQLARVKDWINSYHGDTVELTDILSTFTDI SVALTEEIVDKLVKEGILSKAGTDIYCINKTKVSDYDFDAVKEEADDLAVGLGDKTPRVDDQLYMKALYHTLPMTYVTIANLQSKLGGGASLTTMRKLIT KMTKDGYLEARGNLRLGKRVIHSITTEKKLLEVKRALQIDPMDLDTNEPQSMKKVPLGEFPTKGTDQRDNNSTCGALRSVGSDLTRMKLRSDMNENGSIR TEQTVSKTREHGNTPTSRAEPVTSRESFAPGNEEEAIIRSKSTQDKKARKTSMWPQQKEEVTNQSSDSLTTRQSPSTCPSRTLYFSPIHQRPHKECDRLE TPTSSNVPFTALRSLQRSLIKTPNPIDLHFPLANKPARFIKTRAASADLHSDNNHQISARRVLQSKGASYSNEADSRAASVYSSAMSEVENKTNTGPELK HLGIVRLAAIKTLVCVSNLYGYAKQNSGPLRSTVGSVERTVSSIVDPVYRKFKGVPDNLLVFFDRKVDEAAHKFDKHAPPLAKQVVSQAQSLVHSTTEKA QKLFDEARTGGPRAAFSYTVTETKQVVLTNSVKAWCILDKYPSVHKIGAKALPIAAHWSDKYNHTVKDLSQKGYPLVGYLPLVPIDKIEKTFKEEKDEVK KEGTNGTQHKADEKDSSSDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	0	1
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	3.2	0.8612
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	4.6	0.8737
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	5.3	0.8262
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	5.7	0.8544
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	7.3	0.8245
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	7.7	0.8331
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	7.7	0.8165
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	11.0	0.8229
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	11.2	0.8161
AT5G56980			unknown protein		Lus10014282 [exp]	12.0	0.8228

Compare expression of checked genes

Lus10015786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.