Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11860 358 / 1e-122 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 192 / 4e-56 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 179 / 2e-51 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G29770 102 / 2e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 99 / 1e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 92 / 6e-21 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 67 / 3e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 54 / 8e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 54 / 9e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 51 / 6e-07 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037019 [exp] 706 / 0 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037018 [exp] 449 / 1e-158 AT5G11860 108 / 1e-27 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10004596 [exp] 216 / 1e-64 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 208 / 2e-62 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 156 / 2e-42 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10007321 [exp] 99 / 8e-23 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 97 / 5e-22 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 65 / 3e-11 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 64 / 4e-11 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173700 [exp] 511 / 6e-180 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 489 / 2e-171 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 221 / 4e-66 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 215 / 1e-64 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.004G062900 [exp] 97 / 1e-22 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 90 / 6e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 70 / 5e-13 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 69 / 9e-13 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 65 / 1e-11 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 64 / 3e-11 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10015787 pacid=23167647 polypeptide=Lus10015787 locus=Lus10015787.g ID=Lus10015787.BGIv1.0 annot-version=v1.0 ATGCAAACCAAAAAGAGGGTTTCTGGGAGGAATAGTTGTAGAGAGAATGGAAACTCCAGGATCACAAGAACTCAGAAGAAAGTATCAGAAAACACCCAAG TTGCTCAAAAGAAAGCCAGTGATCTGATTGCATCTTCAGCAAGAAAGCAGAAATGTGGCACATCTGTGAAGAAACAACAGGAGCCTATTGCAGCAACAAA TTTGGATACCATATATGACATTCCCGATGAGAAGACGTTAGGGGTTGCTTCTGGGTTTGATGCGGTGAATCACGAGGTTTGTTATGGAGGAGCTACTGAA TGCGCATCAGAATCTATTTTTTCTCCTGGTTTTCACTCTTCTAAAATATCTGGAGCAGAAATTGACAGCGGAGTTAACTTCGTCAAATCATTCCGGAACA ACGAGCAGGCCTCATTCCAAGATAATGCAACAGGGTACTCAACCATCGACGTTAAAACTTTTGCATCCACTGCGGATGAGAGAATATCAGATACAGAGGG AACTGGCCTGTCATCTGAAGTCTCCGCTATATACCTGGCCATGAAGAACTCAAAGCTCGAGTGTGTGGACGAGCATGAACAAGATCCTATGTCCACTGAT ATGTGTTCAGAAGAAGAGGAGTACGAGGAGTTTGACGATTTCGACCCATATTATTTCATCAAGAACTTGCCTGAACTGTCATCTGTTATTCCCACTTTTA GACGTGGATTATTGCCCAAGCAGACTCGAAGTTGCCCTCCGACCACTCTTGTCTTGGACCTAGACGAGACTTTGGTGCACTCCTCGCTAGAACCATGTGA CGGTGCTGACTTCACATTTCCTGTAGTCGTTAATCAAGAAAAGCATACTGTTTATGTTCGATGTCGTCCTCATCTCAGGGATTTCATGGACAGAGTTTCT CGTCTCTTTGAGATAGCCATATTTACAGCTAGCCAAAGTATCTACGCAGAGCAGCTTCTGAATGTCCTAGATCCGAAAAGGAAAGTGTTTCGACATCGCG TTTTCCGAGAGTCCTGTGTGTTTGTGGAAGGGAACTATGTCAAAGATTTGACGATCCTTGGACGTGATTTGGCTCGTGTTATCATAATCGACAACTCCCC TCAGGCATTCGGTTTCCAAGTAGACAATGGGATCCCCATAGAAAGCTGGTTCGATGATCCTACTGACCAGGAACTGCTCCTACTACTGCCATTCTTGGAG AGCTTGGTGGGTGTAGAAGATGTTCGCCCATTGATCGCCAGGAAATTCAACCTTCAACAGAAAGTAGCTGCTGCTACTTTTTCATCTATAAGCTCAAGTG GAGACCCATTTGAAAGGTAA
AA sequence Show only first row Show all	>Lus10015787 pacid=23167647 polypeptide=Lus10015787 locus=Lus10015787.g ID=Lus10015787.BGIv1.0 annot-version=v1.0 MQTKKRVSGRNSCRENGNSRITRTQKKVSENTQVAQKKASDLIASSARKQKCGTSVKKQQEPIAATNLDTIYDIPDEKTLGVASGFDAVNHEVCYGGATE CASESIFSPGFHSSKISGAEIDSGVNFVKSFRNNEQASFQDNATGYSTIDVKTFASTADERISDTEGTGLSSEVSAIYLAMKNSKLECVDEHEQDPMSTD MCSEEEEYEEFDDFDPYYFIKNLPELSSVIPTFRRGLLPKQTRSCPPTTLVLDLDETLVHSSLEPCDGADFTFPVVVNQEKHTVYVRCRPHLRDFMDRVS RLFEIAIFTASQSIYAEQLLNVLDPKRKVFRHRVFRESCVFVEGNYVKDLTILGRDLARVIIIDNSPQAFGFQVDNGIPIESWFDDPTDQELLLLLPFLE SLVGVEDVRPLIARKFNLQQKVAAATFSSISSSGDPFER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	2.0	0.9042
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	2.0	0.8806
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	4.9	0.8636
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	6.0	0.8687
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	7.4	0.8527
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	8.5	0.8603
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	8.5	0.8612
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	11.0	0.7946
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	12.4	0.8184
AT3G48210			unknown protein		Lus10042089 [exp]	13.0	0.8525

Compare expression of checked genes

Lus10015787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.