Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13710 455 / 3e-157 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 441 / 2e-151 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT2G46660 421 / 9e-144 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT5G09970 416 / 2e-141 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT3G61880 398 / 9e-135 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G01190 393 / 1e-132 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT2G45550 228 / 4e-69 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT5G07990 228 / 4e-69 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 226 / 2e-68 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45570 225 / 5e-68 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036627 [exp] 434 / 9e-149 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 423 / 3e-144 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 414 / 4e-141 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 411 / 6e-140 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10005780 [exp] 408 / 2e-138 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10030216 [exp] 404 / 3e-137 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10001670 [exp] 359 / 1e-119 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10035502 [exp] 231 / 4e-70 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10020847 [exp] 226 / 3e-68 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054800 [exp] 616 / 0 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 614 / 0 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.005G084500 [exp] 445 / 4e-153 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 429 / 6e-147 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 424 / 8e-145 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 422 / 2e-144 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.003G146800 [exp] 402 / 2e-136 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 402 / 5e-136 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.014G102700 [exp] 400 / 2e-135 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 399 / 4e-135 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015788 pacid=23167680 polypeptide=Lus10015788 locus=Lus10015788.g ID=Lus10015788.BGIv1.0 annot-version=v1.0 ATGGGTCCGCTCGCCCATCGAAAACTAGCCGATGCAGCAGCCAGAATGGGCGCAACCCGGCTCATGGCGTTCAGCCTGGGGACGGTGCCCATGATCATAA GCAGCCACCCTGACACTGCTAGGGAGATCCTGATCGGGCCATCTTTTTCGGACAGGCCCGTCAAGATCTCTGCACGCCTGCTAATGTTCGAGCGTGCCAT TGGGTTTGCTCCCTCTGGCGGGACATACTGGCGGCAGCTACGCAGGATAGCTGCAGTACACATGTTCTCGCCCAGAAAAATATCGGACCTCGAACCGGTG AGGCAGCGGATAGCAAGGGAGATGGTGGAGAAGGTCAGGAGTGAGATGGCGGCGGGGACAACGAAACGGGTAGTTTTGAGGGAGGTGTTGCAGAAGGGGT CGTTGGATAATGTGTTGGAGAGCGTGTTTGGGAATGTTGGTTTGGAAGTGAGGGAGGAGCTAGGGTTGATGGTGAAAGAAGGGTTTGAGTTGATTGCTAA GTTCAACGTTGAGGATTATTTCCCGGCGGTTAGGTTTTTGGATGTTTATGGGGTGAAACGGCGGTGTTTTAAGCTGGCCGGTAAGGTCAACGAGGTTGTG GGTCGGGTCGTGGGTGAGAGGAAAAAGGAGTCAATGATTAAAGGGCCGACAAGTAGTGATTTTCTTAGTGCTTTGCTTTGTTTGCCTGAACAGGAACGGC TTCAAGAATCAGATTTGGTGCCGATTTTGTGGGAGATGGTGTTTCGAGGAACGGACACTGTAGCGATACTTCTCGAGTGGATCATGGCACGAATGGCACT TCACCCAGAAATCCAGAGAAAGGCACAACAAGAGCTCGACGACTTAGTCGCCCGAGAAACCCAAGTAGTACTCCAAGATTCCGACATCCAGAACCTGCCT TACCTGCAAGGCATTGTGAAGGAAACACTGCGCCTCCATCCGCCAGGCCCACTCCTATCGTGGGCCCGACTCGCCATTCACGACGTTCACGTTGATAAGA CGCTCATCCCTGCTGGAACAACCGCCATGGTCAACATGTGGGCCATAACCCACGATCCCTCCATCTGGACGGACCCGTGGGAGTTCAAACCGGAGCGATT TATTGAGAATGATGTGTCCATCATGGGATCGGACCTGAGGCTGGCCCCATTTGGGTCGGGCAGGAGGGTGTGCCCTGGGAAGGCGTTGGGGCTGGCGACG GTGCAGCTGTGGTTGGCCCGGTTTCTCCAGCGATTCGACTGGCTACCAGCCGAGCCTGTTGATCTGTCAGAACATTTGGGAATGACTATGGAGATGAAGC GACCGTTAACTTGTTACGCTGTGGAACGTAGGGTTATGTGA
AA sequence Show only first row Show all	>Lus10015788 pacid=23167680 polypeptide=Lus10015788 locus=Lus10015788.g ID=Lus10015788.BGIv1.0 annot-version=v1.0 MGPLAHRKLADAAARMGATRLMAFSLGTVPMIISSHPDTAREILIGPSFSDRPVKISARLLMFERAIGFAPSGGTYWRQLRRIAAVHMFSPRKISDLEPV RQRIAREMVEKVRSEMAAGTTKRVVLREVLQKGSLDNVLESVFGNVGLEVREELGLMVKEGFELIAKFNVEDYFPAVRFLDVYGVKRRCFKLAGKVNEVV GRVVGERKKESMIKGPTSSDFLSALLCLPEQERLQESDLVPILWEMVFRGTDTVAILLEWIMARMALHPEIQRKAQQELDDLVARETQVVLQDSDIQNLP YLQGIVKETLRLHPPGPLLSWARLAIHDVHVDKTLIPAGTTAMVNMWAITHDPSIWTDPWEFKPERFIENDVSIMGSDLRLAPFGSGRRVCPGKALGLAT VQLWLARFLQRFDWLPAEPVDLSEHLGMTMEMKRPLTCYAVERRVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	0	1
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Lus10009021 [exp]	2.8	0.9306
					Lus10005187 [exp]	3.0	0.9539
					Lus10010117 [exp]	4.2	0.9539
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10014754 [exp]	4.9	0.7081
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	5.2	0.9539
					Lus10009449 [exp]	5.5	0.7732
AT5G08391			Protein of unknown function (D...		Lus10037035 [exp]	5.8	0.7502
					Lus10002152 [exp]	6.0	0.9539
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	6.7	0.9539
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	7.3	0.9539

Compare expression of checked genes

Lus10015788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.