Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27920 650 / 0 MAP65-8 microtubule-associated protein 65-8 (.1) AT5G55230 464 / 8e-158 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT4G26760 460 / 4e-156 MAP65-2 microtubule-associated protein 65-2 (.1) AT2G01910 390 / 2e-128 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT5G51600 383 / 1e-124 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT1G14690 372 / 9e-122 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT2G38720 354 / 5e-115 MAP65-5 microtubule-associated protein 65-5 (.1) AT3G60840 305 / 3e-95 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G62250 299 / 4e-94 MAP65-9 microtubule-associated protein 65-9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032567 [exp] 445 / 4e-149 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 445 / 1e-148 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10008705 [exp] 404 / 2e-134 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10015684 [exp] 404 / 4e-132 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10026114 [exp] 395 / 6e-131 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10037691 [exp] 399 / 2e-130 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10031939 [exp] 383 / 1e-125 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 378 / 1e-123 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10041635 [exp] 372 / 7e-122 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173300 [exp] 759 / 0 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.001G055100 [exp] 731 / 0 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.011G092500 [exp] 472 / 5e-161 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 461 / 1e-156 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.003G192400 [exp] 399 / 1e-132 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.015G131400 [exp] 390 / 4e-127 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.008G139700 [exp] 378 / 4e-124 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.012G129600 [exp] 374 / 7e-121 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.014G070100 [exp] 370 / 1e-119 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.006G269800 [exp] 132 / 2e-36 AT5G51600 186 / 2e-56 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [flax] [poplar] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Lus10015789 pacid=23167661 polypeptide=Lus10015789 locus=Lus10015789.g ID=Lus10015789.BGIv1.0 annot-version=v1.0 ATGGGTTCAATTCCAATGATGCTCCAGGAAACATCATGCGGATACCTGCTCCAGGAATTGCAGATGATATGGGACGAAGTCGGCGAAGCACAGTTCCACA GGGAGAAAGCTCTGCTGGACATGGAGCAGGAGTGTCTAGAGGTGTACAGGAGGAAAGTCGACAGCGCCAATGTTTCGAGAGCTCGACTGCATCAGGAGTT GGCCGAATCCGAAGCTGAGCTGACCCATCTCCTCCTTTCGTTGGGCGAGCAACGGTCTCTCCCTGGACGGCCGGAAAAGGTGTCAGGAACGCTGAAGGAG CAGCTGGATGCCATAACCCCGAGTTTGAGGGAGATGAGGCTGCGGAAGGAGGACCGAGTTAACCAGTTTCGAAGCGTGCAGGGCCAAATACAGAGGATAT CATCAGAAATTGCAGGTCAGTCTTTGTATTATGATGATCCGGTAACGAATGTGACTGTAAACGAGAATGACCTTTCTATGAAGAAGCTCGAGGAGTATCA AAGTGAGTTGCAGAGGCTGCACAAGGAAAAGAATGGCAGGCTTCAGCAAGTGGAGATGCACACAGAAACAATCAGAAACCTGTGTTCAGTACTAGGAATG GAGTCCTCCATGATAATAACAAAGGTCCATCCTACTCTGAACGATCTCTGTGGAATCTCCAAGAACATAAGTGACACCATACTCGCCAAGCTGAGCAGCA CTGTTGAGTCTCTAAAGGAAGAGAAACAGAAGCGCACTGATAAGCTTTACCATGTAGGCAAGGAGTTGACCAACTTGTGGAACATTCTCGTCGACACGCC TTACGAGGACCGCCACCGGTTCTTTCATGTCACAAACTTTCTGCGTACGTCTCCACCATTGTTAGAAGATGAAGGAAGCCTTGCGCTGTACGTAATCGAG GATGCTGAAGCTGAAGTGAAGAGGCTGGATCAGTTGAAGGCTAGCAAGACTAAGGAGTTGTTCTTTAGGAAAAGGAGTGAGCTTGAAGCGATATGTAGTA CGTCACATATGGAGGTGCCTAATTCAAGGTCGGATGTTGAGAACATAGTGAACCTTATCGACTCTGGTGAGATTGATCATGCGAATCTGCTGATGAGCAT GGACGAACAAATATCGAAAGCGAAAGAGGAAGCTTCGAGCAGGAAGGGAATCATGGAGAAAGTTGAAAGGTGGATGCTTGCAAGAGATGAGGAATGCTGG TTGGAAGAGTACAGCAGGGATGAGAACCGCTACTCGGTGAGCAGAGGAGCTCACAGGAACCTACGACGAGCAGAAAGAGCTCGAATCCTAGTCAGCAAGA TTCCAGATTTACTAGCCTCAGTTGTTGCCAGGACAAAGAACTGGGAGGATGAGAGGAGCAAAGTGTTCTTGTATGACAATGTACCTTTGCTGGCAATGGT GGAAGAGTACAGAATCCTGAGGGTGGAGAAAGAGGAAGAGAAGCTAAGGCAAAAGGGAATAATGAAGAAGCTTCAAGTCCAAGTAACAGATCCTGCAGAA TCAGAATCTCCCTTCAGCTCCAGGCCAGGAACCAGCAATCGGCGCCTTTCGAACCGAAGCTTAAACAGTGGAGGAGGTTTAAGCTATGTCAACAACAACC CGTCAAACAGAAGGCTGTCCATGAACAGCAGCATGCAGCAGTTTGGTAGTAACAGCAATGGAAGGAAAATGCATGAAATTACCAAAGTGTCCAGCCGACG TGGCATGGCTCCGCGGTTTCAGGACGAAACTGCTTCTGTAGTCTCCACATTCTCTGGCCCCATGTCCCCTTAG
AA sequence Show only first row Show all	>Lus10015789 pacid=23167661 polypeptide=Lus10015789 locus=Lus10015789.g ID=Lus10015789.BGIv1.0 annot-version=v1.0 MGSIPMMLQETSCGYLLQELQMIWDEVGEAQFHREKALLDMEQECLEVYRRKVDSANVSRARLHQELAESEAELTHLLLSLGEQRSLPGRPEKVSGTLKE QLDAITPSLREMRLRKEDRVNQFRSVQGQIQRISSEIAGQSLYYDDPVTNVTVNENDLSMKKLEEYQSELQRLHKEKNGRLQQVEMHTETIRNLCSVLGM ESSMIITKVHPTLNDLCGISKNISDTILAKLSSTVESLKEEKQKRTDKLYHVGKELTNLWNILVDTPYEDRHRFFHVTNFLRTSPPLLEDEGSLALYVIE DAEAEVKRLDQLKASKTKELFFRKRSELEAICSTSHMEVPNSRSDVENIVNLIDSGEIDHANLLMSMDEQISKAKEEASSRKGIMEKVERWMLARDEECW LEEYSRDENRYSVSRGAHRNLRRAERARILVSKIPDLLASVVARTKNWEDERSKVFLYDNVPLLAMVEEYRILRVEKEEEKLRQKGIMKKLQVQVTDPAE SESPFSSRPGTSNRRLSNRSLNSGGGLSYVNNNPSNRRLSMNSSMQQFGSNSNGRKMHEITKVSSRRGMAPRFQDETASVVSTFSGPMSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	1.4	0.9815
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	1.7	0.9744
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	2.8	0.9814
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	4.2	0.9623
AT1G07120			unknown protein		Lus10031863 [exp]	5.1	0.9577
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	5.7	0.9642
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	5.7	0.9734
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	5.9	0.9687
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	6.0	0.9671
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	7.0	0.9668

Compare expression of checked genes

Lus10015789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.