Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67400 361 / 1e-126 ELMO/CED-12 family protein (.1) AT2G44770 300 / 1e-102 ELMO/CED-12 family protein (.1) AT3G60260 291 / 3e-99 ELMO/CED-12 family protein (.1.2.3.4) AT1G03620 255 / 5e-85 ELMO/CED-12 family protein (.1) AT3G03610 256 / 9e-85 ELMO/CED-12 family protein (.1) AT3G43400 221 / 2e-72 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037017 [exp] 505 / 0 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 309 / 3e-106 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 264 / 2e-86 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 246 / 4e-82 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 246 / 2e-81 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 239 / 7e-78 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 235 / 1e-76 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175301 [exp] 397 / 7e-141 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.010G060700 [exp] 391 / 1e-138 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.002G138700 [exp] 295 / 6e-101 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 295 / 7e-101 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.013G069000 [exp] 229 / 2e-74 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 225 / 3e-72 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10015790 pacid=23167686 polypeptide=Lus10015790 locus=Lus10015790.g ID=Lus10015790.BGIv1.0 annot-version=v1.0 ATGGGCGTAGTTAGAGCTCAACAAGGCCACAGCTTCTCCTTCTCCACCACTATTTCCATCTCCTCCCGTTGCTCCCAAGGCACTCCTCCTCCTTCTAATT CTTCAGAGGAAAATGGAGCTTCTGGAGCTTGGATTGGTAAAGGGCTCACTTGTGTGTGCTTCAATAGGAAAGGAGTTTATCATCAGCGCATCTTCATCAA CATGACTCCTCACCAGGAGGAAAGGCTGAGGAGGTTGAAGCATCGGATGAAGGTCAATTTCGATACCTCTAGGACCGATCACCAGGCAGCTCTAAGAGCA TTATGGTCAGCTACATATCCAGACAAACAGCTATGTGGACTGATATCTGATCAATGGAAGGAAATGGGGTGGCAGGGTAAAGATCCTTCTACTGACTTCA GGGGAGCTGGGTTTATTTCCTTGGAGAATCTGCTGTTCTTTTCCAAGACTTTTACGACGTCGTTTCAAGTGTTGCTGAAGAAGCAAGGAGGAAAGAGATC GGCCTGGGAGTATCCATTTGCTGTTGCTGGCGTAAACATCACGTTCATGATCATGCAGATGCTTGACCTCGAAGCTACTAAGCCTAGGACGTTCGTTAGG TCTGTTTTCTTGCAGATGTTATCAGAAGACGAGTGGGTGTTTGACTTGCTATATTGCGTGGCGTTTGTGATTATGGACAAGCAATGGCTAGAGAGTAATG CAACCTACATGGAGTTCAATGAGGTTTTGAAGTCAACTAGAGCTCAGGTCGAGAGAGAGCTTCTAATGGACGATGTTCTTCGAATCGAGGACATGCCTTC ATATAGCCTTCTATGCTAG
AA sequence Show only first row Show all	>Lus10015790 pacid=23167686 polypeptide=Lus10015790 locus=Lus10015790.g ID=Lus10015790.BGIv1.0 annot-version=v1.0 MGVVRAQQGHSFSFSTTISISSRCSQGTPPPSNSSEENGASGAWIGKGLTCVCFNRKGVYHQRIFINMTPHQEERLRRLKHRMKVNFDTSRTDHQAALRA LWSATYPDKQLCGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFSKTFTTSFQVLLKKQGGKRSAWEYPFAVAGVNITFMIMQMLDLEATKPRTFVR SVFLQMLSEDEWVFDLLYCVAFVIMDKQWLESNATYMEFNEVLKSTRAQVERELLMDDVLRIEDMPSYSLLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	0	1
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	1.0	0.9565
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	5.7	0.9190
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	7.2	0.8569
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	10.7	0.8136
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012181 [exp]	12.4	0.7542
AT3G14760			unknown protein		Lus10042496 [exp]	13.4	0.8108
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	13.5	0.8831
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	15.9	0.8290
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	17.4	0.8806
AT4G23020			unknown protein		Lus10006336 [exp]	18.0	0.8046

Compare expression of checked genes

Lus10015790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.