Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67410 576 / 0 Exostosin family protein (.1) AT3G45400 310 / 3e-101 exostosin family protein (.1) AT1G74680 306 / 8e-100 Exostosin family protein (.1) AT3G03650 300 / 6e-97 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT2G35100 269 / 1e-85 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 251 / 2e-78 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G16890 229 / 3e-69 Exostosin family protein (.1) AT1G34270 223 / 2e-67 Exostosin family protein (.1) AT4G38040 100 / 9e-23 Exostosin family protein (.1) AT3G07620 94 / 2e-20 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037016 [exp] 865 / 0 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 317 / 2e-103 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 313 / 9e-102 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 298 / 5e-96 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 300 / 1e-95 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10024214 [exp] 290 / 9e-94 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10013627 [exp] 281 / 2e-91 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10038355 [exp] 273 / 5e-87 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 271 / 6e-85 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034500 [exp] 622 / 0 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 311 / 2e-101 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 311 / 2e-101 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 310 / 2e-100 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.012G124600 [exp] 273 / 6e-87 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 266 / 3e-84 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 244 / 2e-75 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 240 / 3e-74 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 233 / 5e-71 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 100 / 2e-25 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10015791 pacid=23167620 polypeptide=Lus10015791 locus=Lus10015791.g ID=Lus10015791.BGIv1.0 annot-version=v1.0 ATGGAGGAGATCGGCAGAGCTCGGTCCCCCAAGATGTACGGGAAAGTCATAATCTCAGTAATTTTCTTCCTCCTCCTCGCTTTCTCCTACTCAATCTTCA TCGGATCTCTCGACTTCCGCCCATACTTCTTCCCACGCCTCCCGCAGCTGCAGCAGCATTCACCGGAGGCGTCTCCACCGGCGGACGCTTCTTCTTGCGA GTACAAGCCGCTGAATGTCTACATGTACGATCTTCCGCGGAAGTTCCACGTCGGGATGATGGATCCGGCAGCTGGCCAGGAGAACGAGCCGGTGACCGTC GAAAACATACCGCGGTGGCAGAAGAACGCTGGGGTGAGGAAGCAGCACAGCGTGGAGTACTGGCTGATGGTTTCACTTCTGTCCGATGGTGACGGCGGAG GAGGGAGGGAGGCGGTTAGGGTTTTGGATCCGGAGAAGGCGGATGCGTTCTATGTCCCGTTTTTCTCATCTCTGAGTTTCAATACTCACGGGCATAACAT GACGGATCCGGAGACGGAGGCTGATCGGCAATTGCAGGTTGAAATAATCGACATGTTGTACAAATCCAAGTATTGGCAAAGATCTGGAGGCAGAGACCAT GTCATTCCCATGACACATCCCAACGCTTTCAGGTTTCTACGACAAGAGCTGAATGCATCCATTCTCATTGTAGTAGATTTCGGGCGCTATCCGAGATCTA TGTCAACCCTGCATAAAGATGTCGTGGCTCCTTATGTGCATGTTGTGGATACTTTCACAAATGACGATGTTAAGGATCCATACGAATCGAGGAAAACACT TATTTTCTTCCGTGGGAGTACAGTCAGAAAAGATGAAGGTAAAGTACGTGCTAAATTGGAGAAGATATTAGCTGGTCAGGAAAGTGTTCGGTATGAGCAG GGCAGGCCTACTACTCATTCAATACAAGAGTCAACAGAAGGAATGCGGTCATCGAAATTCTGTCTGCATCCAGCAGGAGACACGCCTTCATCATGCAGGC TATTCGATGCGATTGTCAGCCACTGTGTTCCCGTGGTTGTGAGCGATAAAATCGAGCTCCCTTACGAGGACGAAATCGATTACACCAAATTCGCCCTCTT CTTCTCGGACAGCAAAGCACTGAAGCCCGGATACTTAGTCGACAAGCTCCGTAACTTCCCAAAGGAGAGATGGTTGGAAATGTGGAGAAACCTAAAGAAC ATATCTCGTCACTTTGAGTTCGAGTTCCCGCCGGCTAAAGGAGATGCGGCAGACATGCTGTGGAGACAGATCAGGCGGAAGCTTCCAGAGGTTCAGCTTG CTGTACATAGAAGCCATAGATTGACTGTTCCGGATTGGTGGCGACGAAGACGATGA
AA sequence Show only first row Show all	>Lus10015791 pacid=23167620 polypeptide=Lus10015791 locus=Lus10015791.g ID=Lus10015791.BGIv1.0 annot-version=v1.0 MEEIGRARSPKMYGKVIISVIFFLLLAFSYSIFIGSLDFRPYFFPRLPQLQQHSPEASPPADASSCEYKPLNVYMYDLPRKFHVGMMDPAAGQENEPVTV ENIPRWQKNAGVRKQHSVEYWLMVSLLSDGDGGGGREAVRVLDPEKADAFYVPFFSSLSFNTHGHNMTDPETEADRQLQVEIIDMLYKSKYWQRSGGRDH VIPMTHPNAFRFLRQELNASILIVVDFGRYPRSMSTLHKDVVAPYVHVVDTFTNDDVKDPYESRKTLIFFRGSTVRKDEGKVRAKLEKILAGQESVRYEQ GRPTTHSIQESTEGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVVVSDKIELPYEDEIDYTKFALFFSDSKALKPGYLVDKLRNFPKERWLEMWRNLKN ISRHFEFEFPPAKGDAADMLWRQIRRKLPEVQLAVHRSHRLTVPDWWRRRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	0	1
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	1.0	0.9270
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	2.8	0.8813
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	3.5	0.8919
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	5.7	0.8921
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	6.0	0.8982
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	8.9	0.8906
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	9.2	0.8625
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	9.3	0.8488
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	9.6	0.8470
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	9.9	0.8835

Compare expression of checked genes

Lus10015791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.