Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67420 486 / 2e-158 Zn-dependent exopeptidases superfamily protein (.1.2) AT1G27400 266 / 7e-84 Ribosomal protein L22p/L17e family protein (.1) AT1G67430 265 / 1e-83 Ribosomal protein L22p/L17e family protein (.1.2) AT5G20660 124 / 7e-29 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037015 [exp] 1131 / 0 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10006421 [exp] 312 / 4e-101 AT1G67430 315 / 1e-111 Ribosomal protein L22p/L17e family protein (.1.2) Lus10009230 [exp] 131 / 5e-31 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037997 [exp] 127 / 9e-30 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175400 [exp] 537 / 2e-178 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.010G060500 [exp] 512 / 9e-169 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.015G094400 [exp] 270 / 3e-85 AT1G67430 324 / 4e-115 Ribosomal protein L22p/L17e family protein (.1.2) Potri.012G096600 [exp] 270 / 3e-85 AT1G27400 321 / 4e-114 Ribosomal protein L22p/L17e family protein (.1) Potri.010G060400 [exp] 262 / 2e-82 AT1G67430 299 / 3e-105 Ribosomal protein L22p/L17e family protein (.1.2) Potri.008G175500 [exp] 256 / 5e-80 AT1G67430 285 / 1e-99 Ribosomal protein L22p/L17e family protein (.1.2) Potri.008G039400 [exp] 129 / 3e-30 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [flax] [poplar] Ribosomal_L22 Ribosomal protein L22p/L17e CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10015792 pacid=23167670 polypeptide=Lus10015792 locus=Lus10015792.g ID=Lus10015792.BGIv1.0 annot-version=v1.0 ATGGCGTTCAGGCTCAGTCCAGGCGATGCTACGGGATTCAAGCTTCTTTTCTTCCTCGCGGCACTGTACGGCCTAATGTCCGTGCTAGTGTACGCTGTAC TCTACATGAAGTTCATTACGCCGCTCGACGTTGACGCTCCTCTCGATCGGTTCTCCCAGGCCAGAGCCGTGGAGCATGTACGAGTATTGACCAGGAATGA ACGCCAGGAAGGGCGTCCTGGATTGAGAGAAGCTGCAAATTACATTAGAAATGAGCTGGAAGAGATAAAAGCAAGAGCTGGATCAAGTTACAGACTGAAA GACCAAGTTTTCTTTGATGACAGAATATCATCAGTGGACTCACTGGCCAATGATGCTTCCGTTCTAGTAAATGGCCATTTTGATAGTCCACTTGGCTCTC CTGGAGCCGGTGATTGTGGTTCTTGCGTTGCATCAATGCTGGAAGTTGCAAGAGTTACTGTCGACTCTGGCTGGATCCCTCCTCGTCCTGTTGTATTTCT TTTCAATGGAGCAGAAGAACTTTTCATGTTGGCTGCACATGGTTTCATGACAACACACGAGTGGAGACATTCAATTGGAGCTGCTATAAATGTTGAAGCA TCTGGGACAGGAGGCCCTGATTTAGTATGCCAATCTGGACATGGTTCGTGGCCTTCTCAAGTATATGCCCAGTCTGCTGTATATCCCATGGCACACAGTG CAGCTCAGGATGTCTTTCCTGTTATTCCTGGCGATACAGACTACAGAATGTTTTCCCAGGATTATGGGAACATTCCCAGCCTTGACATCATCTTTCTTCT CGGCGGATATTACTATCACACCTCCTTTGATACGGTGGACAAACTACTGTTTGCTCATCCATACTTAGCACTCATGACATTTATTCCCTGTTCACTTCTC GGTTTGCTGATGCCAAGAGCTATATGGAGCTCTTTCCCTCTGTCCCAGGTTGCTTCCAACCTTAGCAAAACCAAGGAGGCATTGTCTGATGAAGCTAGGT TTTGGGGAGCATTTGGATTTTATTCTCTCATAACTCTGGCTTATCTTGCAGCTGGGCTCGGCGGTGGGTTCTTGACGTTTTTCATTTCAGCTTCTATGCT TCTAGCTTGGATAATATTTTGCCTTTCTGCCAAGTTTTATGGCTGTCAAACACTTCGGCCAACAATCTCTTACATAGTAACTCTGGTTCCTTGCATCACA TATGGCGTGTATTTCGGTGGATTCCTCATCCAATTCTTTATTGAAAAGACGGGCATGATGGGTGCTATTCCACCTCCGTTTGGATATTATGTTCCCGATG TTTTTGTAGCATCAGTTGTCGGAATGGTAACGAGTTGGTGTGTTGGCCCTTTAATACCCGTCTGTGGTCAGTGGTTAGCTAGATCATCCATCCTCCGGTT CCTGTTGCAAATGAGTGTGATTGCCTTTGCGATCTCCTCACAGTTCTTTCCATACAGCAACACCGCTCCTAAAAGACTTATTCTCGAACACACAATTGTC ACTGCTGATGGAAGTGACATTCTGGATGCAACTTACGATCTAGCGATAGTGGACTCAAATTCCTTGCACTTTCTCTTCAAGCATTCCCCCGAAGCTGCTA AGCAATTGCAAATTGGTTCCGACTTCTCCCTCGAAACTGCTAATAAGTCTCACCATGATGTCTGGGTGTCACTTTACCCAGTTTCACACATGTTCTCTGG AACCCTGAAGTTTCCGGCAAGAAGCGACGAGATCCTGACAAAATACCAACAGTTTCCTCATTTGTATAACACCAATCCTGACACTATCTCTAGTGACGGA TCTCGAAGAGTTCACTTGGAGCTTTCTTTGGGCGACTCGGAAGAGGTATGGGTCACAGTGCTCAATATCACAGGTCCCTTATCAAGCTGGTCCTTCGCCA ACAACGAACTTCCAGCTCCAGAATCCATCCATGGAGGCCCTCCATCGTTCATATTGAGACTCAGCGGATCAAGCCATGAAACCTGGACGTTCTGGTTGGA GGCGGCTAGCAATTCCGAGGAGAAGTTGAGGGTAGTTGTGGCTGTGATAGACCAAGCAATGGTGGACGAGACGGAGAAGCTGAAGGGACTTTTCCCTGAC TGGGTCGATGTCACTGCTTATACCGCTTGCAAAGCTAGGGGCTCTGATCTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCGTTTTCCATCAGGAAGA TGACTTTGGTGCGTGCCAAGAGTTATCTCGAAGATGTCATGGCCCACAAGCAGGCTATTCCCTTCAGGAGGTTCTGTCGTGGTGTTGGAAGAACCGCACA GGCAAAAAATGCTGGTCACCCAAATGGACAGGCTCGTTGGCCTGCCAAGTCTGCTAAGTTCGTCCTTGATTTATTGAAGAATGCCGAGAGTAATGCTGAG GTGAAAGGGTTAGACGTCGATGCTCTGCACATTTCCCACGTCCAGGTTAACCAGGCTCGGAAGCAAAGACGTCGTACTTACCGTGCACATGGAAGAATCA ACCCTTATATGTCGAATCCTTGCCACATCGAGCTGATCCTTTCCGAGAAAGAGGAGCCTGTCAAGAAGGAGCCGGAGACTCAACTGGCGGCTGGTGGCAG GTCGAGGAAGAACCAAGCTTTGCGTAGTGGTGCATCCTCTTAG
AA sequence Show only first row Show all	>Lus10015792 pacid=23167670 polypeptide=Lus10015792 locus=Lus10015792.g ID=Lus10015792.BGIv1.0 annot-version=v1.0 MAFRLSPGDATGFKLLFFLAALYGLMSVLVYAVLYMKFITPLDVDAPLDRFSQARAVEHVRVLTRNERQEGRPGLREAANYIRNELEEIKARAGSSYRLK DQVFFDDRISSVDSLANDASVLVNGHFDSPLGSPGAGDCGSCVASMLEVARVTVDSGWIPPRPVVFLFNGAEELFMLAAHGFMTTHEWRHSIGAAINVEA SGTGGPDLVCQSGHGSWPSQVYAQSAVYPMAHSAAQDVFPVIPGDTDYRMFSQDYGNIPSLDIIFLLGGYYYHTSFDTVDKLLFAHPYLALMTFIPCSLL GLLMPRAIWSSFPLSQVASNLSKTKEALSDEARFWGAFGFYSLITLAYLAAGLGGGFLTFFISASMLLAWIIFCLSAKFYGCQTLRPTISYIVTLVPCIT YGVYFGGFLIQFFIEKTGMMGAIPPPFGYYVPDVFVASVVGMVTSWCVGPLIPVCGQWLARSSILRFLLQMSVIAFAISSQFFPYSNTAPKRLILEHTIV TADGSDILDATYDLAIVDSNSLHFLFKHSPEAAKQLQIGSDFSLETANKSHHDVWVSLYPVSHMFSGTLKFPARSDEILTKYQQFPHLYNTNPDTISSDG SRRVHLELSLGDSEEVWVTVLNITGPLSSWSFANNELPAPESIHGGPPSFILRLSGSSHETWTFWLEAASNSEEKLRVVVAVIDQAMVDETEKLKGLFPD WVDVTAYTACKARGSDLRVHFKNTRETAFSIRKMTLVRAKSYLEDVMAHKQAIPFRRFCRGVGRTAQAKNAGHPNGQARWPAKSAKFVLDLLKNAESNAE VKGLDVDALHISHVQVNQARKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAGGRSRKNQALRSGASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	0	1
AT1G26750			unknown protein		Lus10019740 [exp]	2.6	0.9429
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	2.8	0.9558
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	3.2	0.9470
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	4.2	0.9496
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	4.2	0.9493
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	5.7	0.9369
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	6.0	0.9477
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	6.3	0.9340
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	6.5	0.9451
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	7.4	0.9329

Compare expression of checked genes

Lus10015792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.