Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67440 558 / 0 EMB1688 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G67460 253 / 1e-80 Minichromosome maintenance (MCM2/3/5) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023500 [exp] 595 / 0 AT1G67440 588 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G025300 [exp] 576 / 0 AT1G67440 584 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03193 [flax] [poplar] RsgA_GTPase RsgA GTPase
Representative CDS sequence Show only first row Show all	>Lus10015794 pacid=23167630 polypeptide=Lus10015794 locus=Lus10015794.g ID=Lus10015794.BGIv1.0 annot-version=v1.0 ATGTCGATCGCTTCTTCCTTCTCTATCCCCCGCCACCGCGCGGTAGCCGCCGTCGTCCACCACCACTTCATCCTCCGCAGCTTCAACCGCCGCAATCTCT CGGTCGCTGCAGCCAAACCGCAGCAGCAGAAATCTAGGAACCTCACCAGAAGGCCTCAGCCGAGCAGGAACTTGCTCCGAGCGAGAGAAAACGTGAAGGA GTACTCCTCTCTTTCGCCTCTACTATCGGTCGACGACGAGCTGCATCTCTCCGATTCTCAGGCGATCGGCACCGTAGCAGCAGCTCAGGCCAACTTCATG CGCGTAATCGTCAAGTCGTTTCCGGACTTGGACGAGAGCCGAGCCGATGTTCCTTCTCCGAGCTCCTCAAATGGCGGTAGAGTTGGAATGGAGCTGCTGT GTGTGGTGAGGGCCGTTTTGAAGAAGATAAAGAGGCGTGTTATGGTTGGGGATAGGGTTTTGGTCGGTTCGATTGATTGGGTGGATCGTAGGGGAATGAT TGAGAATGTGTTCCAGAGGAACAGCGAGGTTCTGGATCCTCCGGTGGCCAATGTCGATCATCTGCTGGTACTATTCTCGCTGGAACAGCCGAAGCCGGAG CCCTTTACATTGACGAGGTTCTTGGTGGAGGCCGAGTCCACTGGGATTCCATTGACGCTTGCTCTGAACAAGACGGAGCTTGTCAATATCCAGGCGATTG ATTTATGGAAGGCCAGGCTTGAAGGATGGGGCTACAAGCCGGTGTTCTGCAGCGTAGGAACAAAAGATGGGCTCGAAACTCTAGCATCGATCATGAGAGA TCAAACAACAGTTGTCGTAGGTCCAAGTGGAGTCGGGAAATCGAGCCTGATCAATGTCTTGAGAAACAATCCGGGCAGCCATGACAATGCTGGAGAGGCA GAGAATTGGTCTGAACCTCTACTGCGCAGCAAGTGGTTGGAGGACCAGCGAGTCGGAGAAGTTTCGACAAGAAGTGGTAGAGGGAAGCATACGACTCGTC ATGTTTCGCTGCTCCCACTAGCCGAAGGAGGTTACTTGGCCGATACACCTGGGTTTAACCAGCCGAGTTTGATGAAAGTCACGAAGCAGTCTCTACAGCA AGCTTTCCCTGAGATACGAGAGATGTTGAAAGCCAATGAGGCTGAGAGATGCGAATTCAACGATTGTTTGCATCTCGGTGAGCGAGGGTGCGTTGTAACC GGAGATTGGGAACGATATCCTTTCTATCTTCAGCTTCTAGACGAGATCAGGACCCGGGAAGAGTTTCAATTGCGGACTTTTGGTACAAAAAGGGAAGGCG ACGTGAGGTACAAGATGGGGGATATGGGGAAGAAGCAAGCGGAACCTCGACTGGAGCCTAAGAAGCACAGAAGGGAGTCGCGGAAGAAGATGAACCAGTC GCTAATGGACGAAGTGGAGGATGATGACGACGAGAACCCGATAGATGAGGAAACTGATCCTTTCTTGAAGGCTCTGAGGGAAGAGTATGAGGAATATAAG TAG
AA sequence Show only first row Show all	>Lus10015794 pacid=23167630 polypeptide=Lus10015794 locus=Lus10015794.g ID=Lus10015794.BGIv1.0 annot-version=v1.0 MSIASSFSIPRHRAVAAVVHHHFILRSFNRRNLSVAAAKPQQQKSRNLTRRPQPSRNLLRARENVKEYSSLSPLLSVDDELHLSDSQAIGTVAAAQANFM RVIVKSFPDLDESRADVPSPSSSNGGRVGMELLCVVRAVLKKIKRRVMVGDRVLVGSIDWVDRRGMIENVFQRNSEVLDPPVANVDHLLVLFSLEQPKPE PFTLTRFLVEAESTGIPLTLALNKTELVNIQAIDLWKARLEGWGYKPVFCSVGTKDGLETLASIMRDQTTVVVGPSGVGKSSLINVLRNNPGSHDNAGEA ENWSEPLLRSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLAEGGYLADTPGFNQPSLMKVTKQSLQQAFPEIREMLKANEAERCEFNDCLHLGERGCVVT GDWERYPFYLQLLDEIRTREEFQLRTFGTKREGDVRYKMGDMGKKQAEPRLEPKKHRRESRKKMNQSLMDEVEDDDDENPIDEETDPFLKALREEYEEYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	5.9	0.8222
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	6.8	0.8453
AT5G51010			Rubredoxin-like superfamily pr...		Lus10016735 [exp]	8.1	0.8402
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	11.2	0.8261
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	16.0	0.8382
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	19.5	0.8090
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	20.7	0.8080
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10031030 [exp]	35.1	0.7357
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	36.0	0.7640
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	42.7	0.7799

Compare expression of checked genes

Lus10015794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.