Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24310 363 / 1e-124 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037010 [exp] 482 / 8e-171 AT1G24310 478 / 2e-169 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059100 [exp] 373 / 3e-128 AT1G24310 448 / 1e-157 unknown protein Potri.008G176100 [exp] 345 / 3e-117 AT1G24310 392 / 9e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015795 pacid=23167659 polypeptide=Lus10015795 locus=Lus10015795.g ID=Lus10015795.BGIv1.0 annot-version=v1.0 ATGTTCGGAACTCCGTCCTCAACACCGGCCTTCGGAACTCCGTCTTCCACACCGGCCTTCGGGACTCCGTCTTCCACTCCAGCATTCAGCACTCCGTCTT CTACTCCGGCGTTCGGAACACCGGGATTCGGAACTCCGGGGTCGAATTCGTTGTTCGGAGCTCCGTCTTCAACTCCGGCGTTCGGTACTCCGTCCACTTC CGCGTTTGGTACCGGATTCGGCTCTTCTCTCTTCTCCACACCATTCTCCGCGCAACAAACTCAACAGCAGCATCAACAGGCTTCGCCATTCCAGCAGACG GGCGGCGGTTTCGGATTTCAGAATCAGTTCTCCGCGCAGCTGCAGCAGCAGCCTACGCCATTCCCTAATGCTCAATTGACTACTCAGATGGCCCCCGTGG CCCCGCTCCCTTTCTCCCTCTCCGATCGTGATCTCCAGACGATAGTTGACGCTTACAACTACAAGGAGGATGGTGGGAACCCTAAATATGCTTTCAAGCA TTTGCTGTTCAGTATTACGGATCCACAGATAAGAATCAAGCCCGCGGATGTATCAGATATTATGTGGGCAGAGGCCATGGGGAAGCTAGAAGGCATGGAG AGTAGAGACCGGGAGCGCCTCTGGCCGCAACTTGTTCAAGGTTTCAAACATCTTTCAGACCGCCTCAAGCTTCAAGATGATGTCATTGCTTCAGATGCCG AGAGATTGCAGACGACCCAAAGCAATGTGAAAATGACAATGCGGATACTAGAAGCCTTGGAGAGTAAGGGTTGCCGATTGCCACTTACTAAAGGAGAAGT CGAATTAGCTGAGAAGCTAGCTTTTGTAGTTAGACAGCTGAAAGGTCCTGGAGCAGAACTGGGCAGGAGGGTGCAGAGCCTTCTAACGATCTCTCGTACC CAAGAAAATGGGTTCAATGGAACAGATTTGATGTATCTACCAGGATCAACCAAGATCGATGAACGGAGTCTAGTGGACATGCAAGAGGTCTTACAACAGC AAACAGAGGCTATTGCTAGGCTTGGAAGTGTGTTAAAACGAGACATCAGGGACATGGAGATCATAATGGCCGAGGACACCGTAATGAGCGACGATTTAAG CTGA
AA sequence Show only first row Show all	>Lus10015795 pacid=23167659 polypeptide=Lus10015795 locus=Lus10015795.g ID=Lus10015795.BGIv1.0 annot-version=v1.0 MFGTPSSTPAFGTPSSTPAFGTPSSTPAFSTPSSTPAFGTPGFGTPGSNSLFGAPSSTPAFGTPSTSAFGTGFGSSLFSTPFSAQQTQQQHQQASPFQQT GGGFGFQNQFSAQLQQQPTPFPNAQLTTQMAPVAPLPFSLSDRDLQTIVDAYNYKEDGGNPKYAFKHLLFSITDPQIRIKPADVSDIMWAEAMGKLEGME SRDRERLWPQLVQGFKHLSDRLKLQDDVIASDAERLQTTQSNVKMTMRILEALESKGCRLPLTKGEVELAEKLAFVVRQLKGPGAELGRRVQSLLTISRT QENGFNGTDLMYLPGSTKIDERSLVDMQEVLQQQTEAIARLGSVLKRDIRDMEIIMAEDTVMSDDLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24310			unknown protein		Lus10015795 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	4.2	0.9675
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	6.5	0.9574
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	6.9	0.9512
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	8.1	0.9519
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	8.5	0.9486
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	9.3	0.9562
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	11.0	0.9478
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Lus10033691 [exp]	12.0	0.9245
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	12.4	0.9509
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	13.3	0.9406

Compare expression of checked genes

Lus10015795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.