Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67490 984 / 0 KNOPF, KNF, GCS1 KNOPF, glucosidase 1 (.1.2) AT1G24320 907 / 0 Six-hairpin glycosidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037009 [exp] 1420 / 0 AT1G67490 1078 / 0.0 KNOPF, glucosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059000 [exp] 1116 / 0 AT1G67490 1132 / 0.0 KNOPF, glucosidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF03200 [flax] [poplar] Glyco_hydro_63 Glycosyl hydrolase family 63 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015796 pacid=23167688 polypeptide=Lus10015796 locus=Lus10015796.g ID=Lus10015796.BGIv1.0 annot-version=v1.0 ATGACAGGAGCCGGCCGTCGAACAGCTCGAAGCAGCAAAGGAAAGTATTCATCGGACGGCGGCAACGACGACGGCGATGTTTCTCGTCGTAGCTCGAGGA CGAGCTCGAAATCACGCAAGGATAATAAGAGAAGAGACGGAAGCAGCAGCAGCTTGATTCGTATGCTTAACGTTGACTTGAAAGTCATTATGGCCGTTTG TGGAGGAGCTTCTTTGATCATCTTCTTCCTGATTTACAATCTGATGATAATCCCCGTCGAAGTTTCTCGGAGACCTAGTGTCGTCACTCCATTTCCTTCT CCGAAGCTTATGGACCTTCCTCAGGATGGAAGATATGAAATACGCCATGTGTGCCAAAACTCGGACGATTTGAGCAAGTACGGGTGGATTGCGCATAATG GTCGTGATTTCGGGAAGCAGGAGCTAGTTGAGCAGGAGCTGAAGTTGGAGACCAGTTTCTTGAAGTCCAGGAGTCAAGACAGTGGTTATGGTGGAGATTG GGCTGTCCAAATCGATGTGCAACATGAAAAATCTGGATCAAGTAATGAATTACTGACAACGGGTCACTTATTTTTCTATTTGGCGGATGAGAGTGGCAAT GCTCTAAGTCTGAGCAAGGATGCCAACAATAATCACGAGACTTCTCTCCTGGCATCAGGTTCACGAGCAGACGTTGGGGAGTGGCAGGTTCATTTGAATT CGAAGGACATGTTGGAGGTTCACCATTCTGGTTTCAGGACTCCTCACATTCATAATCTATCTGATCTTGTTCTGCAAGATCTTGGCACGCAGGTAAGGGA TTTTGGTCGTCTACAGTTGCCTGACTCAGCTGAAAATTCTGCAAACATTCTAGTTTTCCAGGTATCTGCAAGGATTCCATTTAGGACAGATATTATCTTT GTATCTGGAACTGGAAAGAAAGATTCAAGACCAGAACAACGTGCGAGCAGCCTAACAGGTGCTTCACTGAGCAGTCAGCTAAAGCAGAAGCAAACAGAAT TTGACTCGAAGTTTGAGCAGCTCTTCAATGGAGCCAACAAGCTGGAAACTGAGTCCACTGTTGTTGGTAAGGCTGCTATTGCCAATATGTTGGGAGGCAT TGGTTACTTCTATGGACAATCAAAGATCGCTTATCCTAATCGCGACTCATTTATTTCATATTGGCCGGCTGAGCTGTATACTGCTGTGCCAAGTCGACCT TTCTTTCCAAGAGGTTTTCTATGGGATGAAGGTTTTCATCAACTACTGATCTGGCGCTGGGACCTCCATATATCTTTAGATATCGTTGGTCACTGGTTAG ACCTGATGAATATCGATGGTTGGATTCCTCGTGAGCAAATACTTGGTTCTGAAGCTCGTAGTAAGGTTCCAGAGGAGTTTATTCCTCAGTACCCAAGCAA CGGAAATCCTCCAACTCTCTTTTTGGTTATCAACGATCTGCTTGACGGAATAGAGAAAAACTTGTTCACGGATGTAGAACGTAGAGATATTACTTTCTTC CTGGAGCGGGCTTTTGTTCGTCTTGAAGCTTGGTACCAGTGGTTTGCTACTACACAATCAGGGAAGCAGATGAGCAGCTACTTTTGGCATGGTAGAGATA ATAGGACAACTCGTGAATTGAATCCGAAGACTCTATCGTCAGGATTGGATGACTATCCTCGTGCCTCGCATCCGAATGACGACGAACGTCATGTTGATCT TCGGTGTTGGATGCTTCTCGCTGCTAGATGCATGCAATCCATCTCAAAGTTCTTTGAGAATGGAAACAGCCCTGGAAAGGAATATGCTTCAACAGTGGAA CTGCTTTCGGATCTCGAGTTACTGAACGAGATGCACCTTGACCCAACCAGTGGAGCTTACTTCGATTTCGGAAATCATACAGAAAAGGTTCGTTTGACTT GGAAAGTGATCAGAGACGGAAACAACCACGCCAGGCGAGAGCTTGTCCGAGAGGTTTTAGAAACGCCGGAATTGAGGCTGGTTCCTCATGTTGGCTTTGG TAGCTTATTCCCATTCATGGGGAAGATCATCCCACCTGATTCATGGATTCTCGAAAAACATCTCGATATGATTTCGAATCGTAGCGTTCTGTGGTCAAAC TACGGACTCCGATCTCTTGCCAGAACAAGCTCAATATATATGAAACGCAACACGGAGCATGACGCACCCTACTGGAGAGGTCCTATCTGGATGAACATGA ACTACATGGCTCTTTCTGCGCTACACCATTATTCCCAAGTGGATGGACCATACAGAGAAAGAGCTGGCCAAATATACAGAGATCTGAGAAGTAATTTGAT AAGAAATGTGGTTCACAATTATCACCAAACTGGGTATCTCTGGGAACAATATGACCAGATGAATGGCAAAGGACAAGGAACTCGGCTCTTTACTGGTTGG ACCGCACTCGTGCTACTAATCATGGGTGAAGCTTATACATGA
AA sequence Show only first row Show all	>Lus10015796 pacid=23167688 polypeptide=Lus10015796 locus=Lus10015796.g ID=Lus10015796.BGIv1.0 annot-version=v1.0 MTGAGRRTARSSKGKYSSDGGNDDGDVSRRSSRTSSKSRKDNKRRDGSSSSLIRMLNVDLKVIMAVCGGASLIIFFLIYNLMIIPVEVSRRPSVVTPFPS PKLMDLPQDGRYEIRHVCQNSDDLSKYGWIAHNGRDFGKQELVEQELKLETSFLKSRSQDSGYGGDWAVQIDVQHEKSGSSNELLTTGHLFFYLADESGN ALSLSKDANNNHETSLLASGSRADVGEWQVHLNSKDMLEVHHSGFRTPHIHNLSDLVLQDLGTQVRDFGRLQLPDSAENSANILVFQVSARIPFRTDIIF VSGTGKKDSRPEQRASSLTGASLSSQLKQKQTEFDSKFEQLFNGANKLETESTVVGKAAIANMLGGIGYFYGQSKIAYPNRDSFISYWPAELYTAVPSRP FFPRGFLWDEGFHQLLIWRWDLHISLDIVGHWLDLMNIDGWIPREQILGSEARSKVPEEFIPQYPSNGNPPTLFLVINDLLDGIEKNLFTDVERRDITFF LERAFVRLEAWYQWFATTQSGKQMSSYFWHGRDNRTTRELNPKTLSSGLDDYPRASHPNDDERHVDLRCWMLLAARCMQSISKFFENGNSPGKEYASTVE LLSDLELLNEMHLDPTSGAYFDFGNHTEKVRLTWKVIRDGNNHARRELVREVLETPELRLVPHVGFGSLFPFMGKIIPPDSWILEKHLDMISNRSVLWSN YGLRSLARTSSIYMKRNTEHDAPYWRGPIWMNMNYMALSALHHYSQVDGPYRERAGQIYRDLRSNLIRNVVHNYHQTGYLWEQYDQMNGKGQGTRLFTGW TALVLLIMGEAYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	0	1
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	2.8	0.8506
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	6.3	0.8205
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	7.3	0.8158
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	8.2	0.8560
AT5G41980			unknown protein		Lus10024452 [exp]	14.4	0.7884
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	14.8	0.8079
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	18.3	0.7963
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	18.8	0.8231
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	26.2	0.8097
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	27.0	0.8104

Compare expression of checked genes

Lus10015796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.