Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67510 879 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 518 / 4e-175 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 496 / 2e-166 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 437 / 5e-144 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 355 / 1e-111 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 343 / 3e-107 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 276 / 1e-82 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 268 / 5e-80 Leucine-rich repeat protein kinase family protein (.1.2) AT2G42290 268 / 5e-80 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 251 / 2e-73 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037006 [exp] 1090 / 0 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 432 / 1e-141 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 425 / 4e-139 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 409 / 8e-133 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 379 / 5e-122 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 326 / 1e-100 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 303 / 3e-92 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 273 / 3e-85 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 264 / 7e-78 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058200 [exp] 962 / 0 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 918 / 0 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 519 / 2e-175 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 512 / 1e-172 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 463 / 1e-153 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 460 / 2e-152 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 379 / 2e-120 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 360 / 4e-113 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 334 / 1e-103 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 286 / 2e-86 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015799 pacid=23167642 polypeptide=Lus10015799 locus=Lus10015799.g ID=Lus10015799.BGIv1.0 annot-version=v1.0 ATGAAGAAATATCTCACCTTCACCTTCCTCTTCCTACTCTTCTACGGCGCCCTCTCCCTCTCCCCCGACGGCATTTCCCTCCTCTCTCTCAAGTCCGCCG TCGACGGCTCCCCTCCGGTCTTCTCCAACTGGAACTCCGACGACCAGACCCCTTGCCAATGGACGGGAGTCTCCTGCATGAATGTCACCGGGTCATCCGA CCCCAGAGTCGTCGGTATCTCCCTCTCCGGCAAGTCCCTGAACGGCTACATCCCGTCGGAGCTCGGGACGTTAATCTACCTCCGCCGCCTCAACCTCCAC AGTAACGAATTTCACGGGTCCATCCCTTTGCAGCTCTTCAACGCCACTTCCCTCCACAGCTTGTTCCTCTACGGGAACAACCTCACCGGCACCTTACCGC CGTCGATGTGCGACAACGTTCCCCGCCTCCAGAACGTCGACCTGTCTAACAACTCCGTCTCCGGGTCCTTGCCGGAAGAGATCAAGAATTGCCGCCAGCT CCAGCGGCTCATCTTGGCCGGGAACAAATTCTCCGGCGAGATACCCGCCGGAATTTGGGCGGAATTGGATACCTTAGTTCAGCTCGATTTATCCTCCAAC GACTTCTCCGGTCCGATCCCGAACGACTTGGGCGAGCTGAAGTCGCTGTCGAATACTCTGAATCTCTCATTCAACCACCTCTCCGGCCGGATTCCGAAAT CCCTAGGGAATTTTCCGGTGACGGTGAGCTTCGATCTCCGGAGTAATAACTTCAGCGGAGAGATTCCTCAAATGGGGTCGTTTTCAAACCAGGGCCCCAC CGCTTTCCTTCAAAACCCTCTCCTATGTGGCTTCCCTCTCCAAAAGCCTTGTAATAACGAGTCAACGCCGAATTCCTCGGCAGGGGAAGGAGACGATACC GATACGACGTCGTTTGGCGGCTCGGATAATAAAAAAGAAGGGTTAAGCTCCGGAGTTATAATTCTAATCTCAGTAGCCGACGCCGCCGGAGTAGCGTTCA TCGGACTGGTGATTGTTTATGTTTACTGGAAGAAGAAGGACGAATCCAACGGCTGTAGCTGCACGGGGAAAGGAAAGTTTGGCGGCGGTGGCGGAGGAGA TGGGAAGTTGTTACCAATCTGTGGGGGATATTTTGGCTGCGGCGGCCGGAGAAGCGAGGATTCGGAGGCGGAGGACGTGGCGGGGGAGAAGTTGGAGGAT GGCGGCGGTGGAGGAGGGAGTGAAGGAGGAGGAGGGGAGCTGGTGGCGATTGACAAAGGGTTTAGTTTCGAGCTGGATGAGCTGCTGAGGGCGTCGGCGT ATGTTCTGGGGAAGAGTGGGTTGGGGATCGTGTACAAGGTGGTGCTCGGGAATGGGATTCCGGTGGCCGTGCGGCGGCTAGGGGAAGGCGGGGAGCAGAG GTATAAGGAGTTTGTAGCGGAGGTGCAGGCGATTGGGAAGGTGAAGCATCCGAATGTGGTGAAGCTGAGGGCTTACTATTGGGCTCCTGATGAGAAGCTG TTGATCAGTGACTTTGTTGCCAATGGGAACTTGGCTACTGCTCTTCGAGGAAGGACTGGTCAACCATCATCAACCAGCAGCCTCTCGTGGTCAACCCGCC TCCGAATCGTAAAGGGAACAGCAAGAGGCCTTGCCTACCTCCACGAATGCAGCCCAAGGAAATTCGTCCATGGCGACATCAAACCATCCAACATCCTCAT CGACAACGACTTCCAGCCTCGAATCTCCGACTTCGGCATCAGACGCCTCGTCACCATCACCGGAGGAGACAACCCATCTTCCTCCTCCGGCGGCGGGTTC ATGGGCGGAGCACTGCCTTACCTAAAACCATCATCATCCCAACCCAACAACAACTACCGCGCCCCTGAAGCTCGAGTCCCGGGGAACAAACCCACCCAGA AGTGGGATGTGTACTCTTTCGGTATTGTTTTGCTCGAATTGCTGACCGGGAAGTCGCCCGAGCTGTCGCCAAGTTCGAGCTCGTCGATGGAGGTTGTGGA TCTTGTGAGGTGGGTGAGGAAGGGGTTTGAGGAAGAGAACCCTCTATCCGAAATGGTGGATCATAGCTTGTTGCAGGAGGTTCATGCTAAGAAGGAAGTT CTGGCTGTTTTCCATTTGGCTATGGGTTGTACTGAGAATGATCCTGAGGTTCGTCCCAGGATGAAGTCTGTTTCCGAGAGTATTGACAGGATTGGGTCGT GA
AA sequence Show only first row Show all	>Lus10015799 pacid=23167642 polypeptide=Lus10015799 locus=Lus10015799.g ID=Lus10015799.BGIv1.0 annot-version=v1.0 MKKYLTFTFLFLLFYGALSLSPDGISLLSLKSAVDGSPPVFSNWNSDDQTPCQWTGVSCMNVTGSSDPRVVGISLSGKSLNGYIPSELGTLIYLRRLNLH SNEFHGSIPLQLFNATSLHSLFLYGNNLTGTLPPSMCDNVPRLQNVDLSNNSVSGSLPEEIKNCRQLQRLILAGNKFSGEIPAGIWAELDTLVQLDLSSN DFSGPIPNDLGELKSLSNTLNLSFNHLSGRIPKSLGNFPVTVSFDLRSNNFSGEIPQMGSFSNQGPTAFLQNPLLCGFPLQKPCNNESTPNSSAGEGDDT DTTSFGGSDNKKEGLSSGVIILISVADAAGVAFIGLVIVYVYWKKKDESNGCSCTGKGKFGGGGGGDGKLLPICGGYFGCGGRRSEDSEAEDVAGEKLED GGGGGGSEGGGGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFVAEVQAIGKVKHPNVVKLRAYYWAPDEKL LISDFVANGNLATALRGRTGQPSSTSSLSWSTRLRIVKGTARGLAYLHECSPRKFVHGDIKPSNILIDNDFQPRISDFGIRRLVTITGGDNPSSSSGGGF MGGALPYLKPSSSQPNNNYRAPEARVPGNKPTQKWDVYSFGIVLLELLTGKSPELSPSSSSSMEVVDLVRWVRKGFEEENPLSEMVDHSLLQEVHAKKEV LAVFHLAMGCTENDPEVRPRMKSVSESIDRIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	0	1
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	2.0	0.9806
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	2.8	0.9807
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	4.0	0.9788
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	4.9	0.9704
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	6.2	0.9792
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	7.7	0.9784
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	9.2	0.9786
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	9.2	0.9783
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	9.8	0.9777
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	9.9	0.9486

Compare expression of checked genes

Lus10015799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.