Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 1007 / 0 ARM repeat superfamily protein (.1) AT1G27910 993 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 981 / 0 ARM repeat superfamily protein (.1.2) AT5G67340 190 / 7e-51 ARM repeat superfamily protein (.1) AT3G46510 188 / 2e-50 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 157 / 3e-39 AtPUB12 PLANT U-BOX 12 (.1) AT1G29340 127 / 6e-30 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT4G36550 126 / 8e-30 ARM repeat superfamily protein (.1) AT1G23030 124 / 2e-29 PUB11 ARM repeat superfamily protein (.1) AT2G23140 122 / 1e-28 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037005 [exp] 1538 / 0 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 1224 / 0 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 1196 / 0 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10028307 [exp] 283 / 3e-84 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 281 / 3e-83 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10043471 [exp] 159 / 1e-40 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 158 / 2e-39 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10006090 [exp] 153 / 1e-38 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 147 / 2e-36 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058000 [exp] 1141 / 0 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 1096 / 0 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 340 / 4e-105 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 320 / 1e-96 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 244 / 8e-70 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 191 / 2e-51 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 166 / 5e-43 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 162 / 7e-42 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 137 / 2e-33 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 135 / 8e-33 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10015801 pacid=23167700 polypeptide=Lus10015801 locus=Lus10015801.g ID=Lus10015801.BGIv1.0 annot-version=v1.0 ATGATGGATATTACCGAAGTCGAAGAAAGTCTTTTCGCAGCAACTGATGCAAAGTTACATGGAGACATGTGCAAAGCTCTCTCAGCAATCTATTGCAAGA TCTCGTCAGTTTTCCCCTCCTTGGAAGCTGCTAGGCCTAGGAGCAAGTCTGGGATACAGGCACTATGTTCATTGCATATTGCACTTGAGAAGGCTAAAAA TGTTCTCCAGCATTGTTCAGAATCCAGCAAACTCTACTTGGCTATAACTGCAGATTCTGCCCTTCTAAAGTTTGAAAGGGCAAGATCTTCCCTTGTAGAT GGCCTTAGGCGAGTTGAAGATATCGTTCCACAGTCAATTGGGTGTCAGATTTTGGAGATCATAAATGAGCTCGAGGGGATCACATTTTCAGTTGATCCAT TGGAGAAACAAATTGGCGATGAGATTATTTCTCTGCTTCAGCAAGGGAGAAAGTTTGACAACTGCAGCGACAGTAATGAGCTGGAGTCCTTTCATCAGGC TGCTACTAAGCTAGGTATTACCTCTTCTCGGGCAGCTCTTACAGAGAGGAGGTGTCTCAAGAAGCTCATTGATAGAGCTCGTGTGGAGGAAGACAAGAGG AAGGAATCAATTGTGGCCTATCTCTTACATCTCATGAGGAAATATTCCAAGTTATTCCGAAGCGACCTTGGAGACGATAACGATTCACAGGGATCAGCAC CTTGTTCGCCCACTATAGTAGGTTTGGTTGAGGATAACCACCCATTCGACCGCCATCTCTCAAAGCTTAGCTCTTTCAATTTCAAGACCAACTTTAGGAG GTCCGGGCAGATGTCTATTCCACCCGAGGAATTGAGGTGTCCGATATCGCTGCAGCTCATGTATGATCCAGTTGTCATTGCTTCTGGGCAAACCTACGAG AGGATATGCATTGAAAAGTGGCTTAGTGATGGCCACGACACATGTCCAAAGTCTCAACAGAAGTTGCCTCATTTGTCTTTGACTCCAAACTACTGTGTCA AAGGACTGGTATCCAGCTGGTGTGAACAAAATGGAGTTCCAGTTCCAGAGGGTCCTCCAGAATCTCTGGACCTGAACTATTGGCGCCTAGTCTTGTCCCA ATCTGATTCCAAATCAAGGCCTTCTGACAATGCTGACCTGTTGAAGGGTGCTAAAGTAGTTCCTTTCGAGGAAAGCAGAACCATCGAGGAGGCCGACGAA AGCCATCCAGAACGTGCATATCCGCAACATGAAGATATTCCCGAGGAAGACTCTGAACTCGATATGCTGAAAAGATACCAAGACTTTCTGACTGTATTGA ATGATAATGATGAAAACTTGCACAGAAAGTGCAAGGTAGTTGAAGAAGTCAGGTTCTTGCTGAAGGATGATGAGGAGGCAAGGATTTACATGGGTGCTAA TGGATTTGTCGAGGCACTTCTGCAGTTTCTGCAGTCGGCTGTCCGTACTAGGAACGCTTCGGCTCAGGATAGTGGCGCCATGGCTCTCTTCAACCTTGCA GTCAACAACAACAGAAACAAAGAAATGATGCTAGCTGCCGAAATCATCCCATTGCTGGAGGAGATGATCTCTTGCTCAGACTCCATCGGATCAGCAACTG CCCTCTACCTGAATCTATCCTGCCTCGAGGAAGCGAAATCCGTCATAGGATCAAGTCTAGCAGTCCCATTCTTAACCCAGATCCTTCAAGGACAGGATCA TCCAACCCAATGCAAACTCGACGCCTTACACGCCGTCTTCAACCTCTCCTCGAACCCATCAAACATCACGAACCTCCTCTCCGCTGGAATCGTCAACAGC CTGCAATCCCTCCTCACCACCCAAGCCGACAACCAAACCTGGACCGAAAAGGCCATAGCGGTAATGCTCAACCTATGCACCAGCGAATCGGGGAAATCAG AGATCGTCGCATCCAGCGGTCTCATCACTGCAATCGCGTCGCTACTAGACATCGGCGAAGCAGTCGAGCAAGAACAAGCGGTGTCGTGTCTCTACATGCT ATGCAACGGCAACGAGTTATGCAGTCAGATGGTGTTACAAGAAGGTGTAATTCCTGCATTGGTCTCGATCTCCGTCAATGGCACCTCAAGAGGGAAAGAG AAGGCACAAAAACTCCTGATGCTTTTCCGCGAACAGCGACAGCGAGATCAGCAGCAGCACCAGCAAGAACAACAAGAACAGCAACAAAACAAACAGTCAC CGCCTTATGCTGCTCCTTCTGAACCAGATACACTACCACGAGCGGAGAGCAGTTCGTCAAAACGAGCACCGGCTGCACCCGATACTAAGCCGCTGTGTAA AGCAGCATCAAGGAGAAAGATGGGGAAAGCCTTCAGCTTTTTGTGGAAGAGTAAGAACTACTCACTGTACCAATACTGA
AA sequence Show only first row Show all	>Lus10015801 pacid=23167700 polypeptide=Lus10015801 locus=Lus10015801.g ID=Lus10015801.BGIv1.0 annot-version=v1.0 MMDITEVEESLFAATDAKLHGDMCKALSAIYCKISSVFPSLEAARPRSKSGIQALCSLHIALEKAKNVLQHCSESSKLYLAITADSALLKFERARSSLVD GLRRVEDIVPQSIGCQILEIINELEGITFSVDPLEKQIGDEIISLLQQGRKFDNCSDSNELESFHQAATKLGITSSRAALTERRCLKKLIDRARVEEDKR KESIVAYLLHLMRKYSKLFRSDLGDDNDSQGSAPCSPTIVGLVEDNHPFDRHLSKLSSFNFKTNFRRSGQMSIPPEELRCPISLQLMYDPVVIASGQTYE RICIEKWLSDGHDTCPKSQQKLPHLSLTPNYCVKGLVSSWCEQNGVPVPEGPPESLDLNYWRLVLSQSDSKSRPSDNADLLKGAKVVPFEESRTIEEADE SHPERAYPQHEDIPEEDSELDMLKRYQDFLTVLNDNDENLHRKCKVVEEVRFLLKDDEEARIYMGANGFVEALLQFLQSAVRTRNASAQDSGAMALFNLA VNNNRNKEMMLAAEIIPLLEEMISCSDSIGSATALYLNLSCLEEAKSVIGSSLAVPFLTQILQGQDHPTQCKLDALHAVFNLSSNPSNITNLLSAGIVNS LQSLLTTQADNQTWTEKAIAVMLNLCTSESGKSEIVASSGLITAIASLLDIGEAVEQEQAVSCLYMLCNGNELCSQMVLQEGVIPALVSISVNGTSRGKE KAQKLLMLFREQRQRDQQQHQQEQQEQQQNKQSPPYAAPSEPDTLPRAESSSSKRAPAAPDTKPLCKAASRRKMGKAFSFLWKSKNYSLYQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	3.0	0.9168
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	5.3	0.9124
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	6.0	0.9084
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	9.5	0.8898
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	9.5	0.8461
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	10.4	0.8974
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	12.0	0.8945
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	12.4	0.8852
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	12.5	0.8126
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	14.0	0.8751

Compare expression of checked genes

Lus10015801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.