Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) AT2G38025 67 / 3e-14 Cysteine proteinases superfamily protein (.1) AT2G27350 45 / 5e-06 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT1G50670 44 / 1e-05 OTU-like cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037002 [exp] 293 / 2e-103 AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) Lus10020438 [exp] 224 / 6e-74 AT3G57810 290 / 3e-97 Cysteine proteinases superfamily protein (.1.2.3) Lus10008986 [exp] 177 / 6e-56 AT3G57810 187 / 9e-58 Cysteine proteinases superfamily protein (.1.2.3) Lus10028840 [exp] 178 / 4e-55 AT3G57810 194 / 4e-59 Cysteine proteinases superfamily protein (.1.2.3) Lus10027758 [exp] 54 / 5e-09 AT2G38025 227 / 4e-75 Cysteine proteinases superfamily protein (.1) Lus10005193 [exp] 47 / 1e-06 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 41 / 0.0001 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177400 [exp] 242 / 2e-83 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G050900 [exp] 226 / 2e-74 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 216 / 1e-70 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G026100 [exp] 185 / 1e-58 AT3G57810 197 / 2e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.010G234300 [exp] 184 / 3e-58 AT3G57810 195 / 9e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G110400 [exp] 74 / 7e-17 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.010G057750 [exp] 60 / 1e-12 AT3G57810 52 / 1e-09 Cysteine proteinases superfamily protein (.1.2.3) Potri.009G160100 [exp] 48 / 5e-07 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 42 / 0.0001 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 40 / 0.0002 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10015803 pacid=23167658 polypeptide=Lus10015803 locus=Lus10015803.g ID=Lus10015803.BGIv1.0 annot-version=v1.0 ATGGATTTTGGGTTAGGTTGGTTCTTGGATTTCTGGATACCAGGAGATGGCAGGTGCTTGTTCAGGTCCGTAGCTCATGGCGCTTGCCTTAGAGCGGGGA AGCCATCCCCTAGCGAAACCGTCGAGAAAGAACTTGCTGATGAGCTCAGAGATGAGGTTGCTGACGAGTTCATCAAGAGAAGGAAGGAGACTGAATGGTT CATTGAGGATGATTTTGATGAATATGTTGGACACATGAGACAGCCTCATGTCTGGGGAGGAGAGCCTGAGCTACTCATGTCCTCTCATGTCCTAAAGACG CCGATCTCAGTTTACATGAAGGATAAGAGCTCCGGAACCCTGAAGGTTATAGCAGAATACGGCCAAGAGTATGGCAAGGATGTCCCGATTCGTGTTCTGT ACCATGGTTATGGCCATTACGATGCTCTTCGAAGCTCGGTGTCCAGTTCGGAATCAAAACAGTGA
AA sequence Show only first row Show all	>Lus10015803 pacid=23167658 polypeptide=Lus10015803 locus=Lus10015803.g ID=Lus10015803.BGIv1.0 annot-version=v1.0 MDFGLGWFLDFWIPGDGRCLFRSVAHGACLRAGKPSPSETVEKELADELRDEVADEFIKRRKETEWFIEDDFDEYVGHMRQPHVWGGEPELLMSSHVLKT PISVYMKDKSSGTLKVIAEYGQEYGKDVPIRVLYHGYGHYDALRSSVSSSESKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57810			Cysteine proteinases superfami...		Lus10015803 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	2.2	0.9003
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	6.2	0.8812
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	8.5	0.8780
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	9.5	0.8813
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	12.8	0.8789
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	21.0	0.8676
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	21.2	0.8698
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	22.2	0.8649
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	24.2	0.8371
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	27.7	0.8766

Compare expression of checked genes

Lus10015803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.