Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43230 370 / 9e-122 unknown protein AT3G01810 352 / 3e-114 unknown protein AT3G57780 312 / 2e-101 unknown protein AT2G42320 309 / 2e-100 nucleolar protein gar2-related (.1.2) AT5G06930 261 / 2e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037001 [exp] 626 / 0 AT3G01810 583 / 0.0 unknown protein Lus10041590 [exp] 370 / 3e-120 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 366 / 6e-119 AT3G01810 605 / 0.0 unknown protein Lus10040502 [exp] 327 / 2e-106 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10011304 [exp] 327 / 4e-106 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057700 [exp] 496 / 4e-171 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 488 / 2e-165 AT5G43230 565 / 0.0 unknown protein Potri.001G333200 [exp] 396 / 4e-130 AT3G01810 652 / 0.0 unknown protein Potri.016G051500 [exp] 323 / 2e-104 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 315 / 3e-101 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015804 pacid=23167664 polypeptide=Lus10015804 locus=Lus10015804.g ID=Lus10015804.BGIv1.0 annot-version=v1.0 ATGCAGTCTACGGCAGTCAAAGGCTCCGGCTCTAAGAAGGCTCATGTTCATGCTCGAAAGCATGGCTTTGGTGATCAAGAACAGGGAAATTTCGCCATCG ATCTATGGCAAAAGGCATTCAAAGATGCATGTGAAAGGCTATGTCCTATCAGAGCTGGCGGCCATGATTGTGGCTGTTTGCACGTTCTGGCTAGACTGGT AATGGAACAGCTGGTAGCTAGATTAGATGTGGCTATGTTCAACGCTGTTCTTCGCGAATCGGCTGACGAAATGCCAACAGATCCCGTTTCGGACCCCATT AGTGATCCTAAGGTCCTTCCCATACCAGCTGGGAAATCAAGCTTTGGAGCTGGTGCACAACTTAAGAATGCAGTTGGCAGCTGGTCCAGATGGCTAACTG ATTTATTCGGTATCGACGATTGCGAGTCTCCAGAAGAGAATGACACACCTTTCAAGATCTTCCATCTCTTGAATGCATTGAGTGATCTCATGATGCTCCC GTTCGAAATGCTCGCTGACCGGTCGACCCGAAAAGAAGTCTGCCCGACGTTCGGACCTCCATTGATCAGGCACATTCTATGCAATTTCGTCCCCGACGAA TTCAACCCAGACCCCATCCCAAATTCGATCCTCGATTCCCTAGATTCAGAGGACGTTGCCGAACCAGAGGACGAAGAAACGCTAACTAGCTTCCCATGCA CGGCAAGAGCGACAGTTTACTTGCCACCCAAGGCAGCTTCAATTGCAAAAATCATAGGAGGAGAAGCTGGAGGCCAAAACAGCAGCAGTCCCTTGCAGAG GAGCGGTTCAACCCTGCTGCGAAAGTCGTACACGAGCGATGACGAGCTTGAAGAGCTAGATTCTCCTTTGAACTCGATCGTAGCCGTTGATAAGCTCGTG GGAGCGTCTTGTTCTAATTCTCCATCTTTGACAGGAAAGGGTGGCCGGAAAGTTGTTAGGTATCAGTTACTCAGAGAAGTGTGGAAAGATGGCCAGTGA
AA sequence Show only first row Show all	>Lus10015804 pacid=23167664 polypeptide=Lus10015804 locus=Lus10015804.g ID=Lus10015804.BGIv1.0 annot-version=v1.0 MQSTAVKGSGSKKAHVHARKHGFGDQEQGNFAIDLWQKAFKDACERLCPIRAGGHDCGCLHVLARLVMEQLVARLDVAMFNAVLRESADEMPTDPVSDPI SDPKVLPIPAGKSSFGAGAQLKNAVGSWSRWLTDLFGIDDCESPEENDTPFKIFHLLNALSDLMMLPFEMLADRSTRKEVCPTFGPPLIRHILCNFVPDE FNPDPIPNSILDSLDSEDVAEPEDEETLTSFPCTARATVYLPPKAASIAKIIGGEAGGQNSSSPLQRSGSTLLRKSYTSDDELEELDSPLNSIVAVDKLV GASCSNSPSLTGKGGRKVVRYQLLREVWKDGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43230			unknown protein		Lus10015804 [exp]	0	1
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	5.0	0.9564
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	8.0	0.9548
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	12.0	0.9481
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	12.0	0.9430
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	12.5	0.9448
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	13.3	0.9417
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	16.7	0.9425
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	18.2	0.9396
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	18.8	0.9436
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	23.4	0.9409

Compare expression of checked genes

Lus10015804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.