Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01810 129 / 6e-31 unknown protein AT5G43230 104 / 4e-23 unknown protein AT3G57780 93 / 2e-19 unknown protein AT2G42320 93 / 2e-19 nucleolar protein gar2-related (.1.2) AT5G06930 66 / 7e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037001 [exp] 1026 / 0 AT3G01810 583 / 0.0 unknown protein Lus10022341 [exp] 114 / 7e-26 AT3G01810 605 / 0.0 unknown protein Lus10041590 [exp] 113 / 8e-26 AT3G01810 603 / 0.0 unknown protein Lus10011304 [exp] 91 / 1e-18 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10040502 [exp] 91 / 1e-18 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177500 [exp] 363 / 4e-113 AT5G43230 565 / 0.0 unknown protein Potri.010G057700 [exp] 184 / 3e-49 AT5G43230 560 / 0.0 unknown protein Potri.001G333200 [exp] 153 / 8e-39 AT3G01810 652 / 0.0 unknown protein Potri.016G051500 [exp] 102 / 3e-22 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 100 / 9e-22 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015805 pacid=23167684 polypeptide=Lus10015805 locus=Lus10015805.g ID=Lus10015805.BGIv1.0 annot-version=v1.0 ATGGTTCTAGGGTTAAGATCAAAGCACAAGAGAGGTGCTTCTATCCAAGTTGATTACCTAATCCAAGTTCAAGAGATCAGTCCATGGCAACCATCACAGT CTGCCAAACCTTCATCAGCATCATCTCTGGTGCTGCAATGGGAGAATGGTGATCAGAGCTATGGATCATTGGTCTGTGGTGTTGTCGAAGGGAAAGTAGA ATCCAGCGACCCTTTCAGGCTTTCAGCCACATTATGTAAAGAAACATCTAAGAAGGGAGGAGACAGTTTCGCCAAGAATTTGTTGGAGTTTTACTTGTTT GAGCAGCCTCGAAAGGACAAGTCGAGTAAAGGTCACCAGTTGGGATCGGCTGTCGTAAACCTTGCAGACTATGGAATCGTTAACGAGGGGATCACAGTTA GTGCTCCGGTGAGCTTGAAGAAGAGCTCGAAGAGCGCCCCTCACCCGATGCTATATGTTAGTATTCAGCCGTTTGAGAGGGATAGTACCAACACTAGTTT GTCGAAAGAAGCGTCGTTGGATAAGGATGTGATGAGTGAGTCTGTTTCAGAAGTGACGAATGATTATGAAGAAGAGGAGATTGCTTCGTTTACAGATGAT GATGTTGACGATGATGTTTCTGGGAATTCCTCGAGGACGGTTTCCTCCTCCGCTTTGGATTCTTCTCGTAGAGCTTCCCCTAGTCAATCCGATAAGAATG TAGCAGCATCTGTGATCTCTAATACGAGAAAAGCTAATGAGAGTCCTGTTCTTCCCTCGAACGTAACAGCTTCACCAGTGATTCAAGCAGAGGAGCGAGT TCAGGTGGAGGAAACTTCGAATCGTCCTAGCATTGACAAATACCAAACCGTGAAAGAACCTGATCCAAAAGATCGGCTAGGGGAGGCAAAAGTTCCCGCT TTACCAGATGGTGATCATGTTGTAAATAAATTAAATGACCAGGAGATTGAAGAGAAACTTCATGGTGAAGTGCGTCGAGATGCTACGAGAAACCAACTGC CTTTGAGGAGTAACACCATTTCGTCGAACAGGCATGCGGTTGGAGGAGCTCAGGGCAATACAAGAAGAGATAAACTAAAGCAGTTAAAATCGATTCAGAT TCAGCATGCTGCTGCATCTGAGAGTGAAAGGCCATTGGGGAATGGCCAGTCTACAGAGAGAGTGAAGAGACATGAAGTTGCTGAAAGAGTTAGTAGAGGT GGAATGATTGCTGATCAAGGAGGTCAAAAGGAAGAAAAACCGAACAGCTCCTCCCTTGTCGAAAACAGTTCCAAAATGAGATCTGAATCTGACAGTGAAA GGCCTTTGGGAAATGGCCATTCTACAGAGAGAGTGAAAAAACTTGAAGCTACTGAAAAATCGAACAGTTACTCTGTCGAGAACGACGTCAAGGTAAGATC TGAAGCTGATATGGTGGTGAAGGAGGAACCAAGCAAAGTTCCTAGTTCCGACAGTGTCCTTAAGTCAGCTAGTCCCAAGAACGAGAACTCAACTGTCAAG ACCCCTCCTGCACAAAGAACAAAGAGGGTTGATCCTTCAAAAATTGCAAAAAATGGAGGCATGAGCCACTCACCAAGTGGACGAGAAGAAACCAAGAGCG TTTCGGGGAACAAAGTTGAAATGCTTGAAGAAGAGTTGATGGAAACCGCTGCTCTTGAGATTGGGCTCTATTCGGTCGTAGCTGAACATGGGAGTTCAGC AACCAAGGTTCATGCTCCAGCAAGGCGGCTTTCGAGATTCTATCTTCATGCTTGCAAGGCAAGGAATCAGGCTAAGAGGGCAAATTCAGCAAGAGCTATC ACTTCCGGCTTGATCTTGGTTTCTAAAGCATGTGGAAATGATGTGCCAAGGTATGAAATTATTGCAGACACTGCTTTACAGCTTAAGTAG
AA sequence Show only first row Show all	>Lus10015805 pacid=23167684 polypeptide=Lus10015805 locus=Lus10015805.g ID=Lus10015805.BGIv1.0 annot-version=v1.0 MVLGLRSKHKRGASIQVDYLIQVQEISPWQPSQSAKPSSASSLVLQWENGDQSYGSLVCGVVEGKVESSDPFRLSATLCKETSKKGGDSFAKNLLEFYLF EQPRKDKSSKGHQLGSAVVNLADYGIVNEGITVSAPVSLKKSSKSAPHPMLYVSIQPFERDSTNTSLSKEASLDKDVMSESVSEVTNDYEEEEIASFTDD DVDDDVSGNSSRTVSSSALDSSRRASPSQSDKNVAASVISNTRKANESPVLPSNVTASPVIQAEERVQVEETSNRPSIDKYQTVKEPDPKDRLGEAKVPA LPDGDHVVNKLNDQEIEEKLHGEVRRDATRNQLPLRSNTISSNRHAVGGAQGNTRRDKLKQLKSIQIQHAAASESERPLGNGQSTERVKRHEVAERVSRG GMIADQGGQKEEKPNSSSLVENSSKMRSESDSERPLGNGHSTERVKKLEATEKSNSYSVENDVKVRSEADMVVKEEPSKVPSSDSVLKSASPKNENSTVK TPPAQRTKRVDPSKIAKNGGMSHSPSGREETKSVSGNKVEMLEEELMETAALEIGLYSVVAEHGSSATKVHAPARRLSRFYLHACKARNQAKRANSARAI TSGLILVSKACGNDVPRYEIIADTALQLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01810			unknown protein		Lus10015805 [exp]	0	1
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	1.0	0.9735
AT5G42710			unknown protein		Lus10010806 [exp]	1.4	0.9609
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	2.8	0.9528
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	3.0	0.9276
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	3.0	0.9562
AT1G22060			unknown protein		Lus10037927 [exp]	3.2	0.9406
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	4.6	0.9306
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	8.1	0.9185
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	8.5	0.9296
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	9.5	0.9146

Compare expression of checked genes

Lus10015805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.