Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08530 442 / 1e-153 CI51 51 kDa subunit of complex I (.1) AT1G11890 109 / 5e-28 ATSEC22, SEC22 SECRETION 22, Synaptobrevin family protein (.1) AT5G52270 41 / 0.0007 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036999 [exp] 475 / 7e-168 AT5G08530 632 / 0.0 51 kDa subunit of complex I (.1) Lus10036987 [exp] 133 / 5e-37 AT1G11890 415 / 6e-150 SECRETION 22, Synaptobrevin family protein (.1) Lus10008135 [exp] 133 / 1e-36 AT1G11890 363 / 7e-129 SECRETION 22, Synaptobrevin family protein (.1) Lus10013175 [exp] 130 / 6e-36 AT1G11890 411 / 2e-148 SECRETION 22, Synaptobrevin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057400 [exp] 457 / 6e-160 AT5G08530 866 / 0.0 51 kDa subunit of complex I (.1) Potri.008G177801 [exp] 171 / 6e-53 AT5G08530 153 / 7e-46 51 kDa subunit of complex I (.1) Potri.001G165600 [exp] 117 / 6e-31 AT1G11890 427 / 9e-155 SECRETION 22, Synaptobrevin family protein (.1) Potri.003G069900 [exp] 117 / 7e-31 AT1G11890 429 / 2e-155 SECRETION 22, Synaptobrevin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF01512 [flax] [poplar] Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10015808 pacid=23167653 polypeptide=Lus10015808 locus=Lus10015808.g ID=Lus10015808.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTTACAATGATAGCCCGTGTCACTGACGGTCTCCCACTGGCGGAAGGTCTGGATGATGGTCGTGATGTCAAAGATATTGAATTGTACAAGC AGCAAGTCAAGGCCTTGTTCAAGAATCTCGCCATTCGCCAGAATGAGCCTTCAAGGATGTCCATCGAGACTGGCCCTTACGTCTTCCATGCCTACATCTC CATTTTCTCTACCTCCTCCTTCGTTTCGCTTCATTTTTTTCCTTTCTTCCCAATACCGCGATCGACCCCGACCAATCGCCGGAGCAATCCACGGCCGTCT ACGACGTTCTACGATATGGCACCCATTAGGGGCATCCTTGCCATGCAAAGGGCAGCTATGGTTCGGCGTCATGCTGACAAATTGGGTGTGGGATTTAGAT CGTTGAGCACCCAAGCTGCGAGCAATTCTGGGGCTCCACAGCCAACACCACCACCACCACCACCTGAGAAGACTCATTTTGGTGGCCTGAGTGATGAGGA TCGGATATTTACTAACTTGTATGGACTGCACGACCCATTTCTTAAAGGTGCAATGAAAAGGGGTGATTGGTATAGAACCAAGGACTTGGTTCTGAAAGGT ACTGATTGGATTGTGAATGAAGTGAAGAAGTCTGGCCTCAGAGGACGTGGTGGAGCTGGTTTTCCCTCGGGACTCAAATGGTCATTCATGCCGAAGGTTT CAGATGGTCGTCCTTCCTATCTTGTGGTCAATGCTGATGAAAGTGAACCCGGTACTTGCAAAGACAGAGAAATCATGCGTCACGATCCCCACAAGCTGTT GGAAGGCTGCTTGATTGCTGGGGTAGGAATGCGAGCTAGTGCTGCGTATATCTACATTAGGGGTGAGTACGTCAATGAAAGGAATAACCTTGAGATAGCA AGGAAAGAAGCCTATGCAGCTGGGCTTCTAGGCAAGAATGCCTGTGGATCTGGCTACGACTTTGATGTTCATATCCACTACGGTGCTGGTGCTTACATTT GCGGGGAAGAGACCGCACTTTTGGAAAGCCTTGAAGGAAAGCAAGGCAAGCCAAGGTTGAAGCCATCGAGCGACACTGTGGAGGTGTCCGTGGTGGATGG GACAACCTTCTTGCAGTAA
AA sequence Show only first row Show all	>Lus10015808 pacid=23167653 polypeptide=Lus10015808 locus=Lus10015808.g ID=Lus10015808.BGIv1.0 annot-version=v1.0 MVKLTMIARVTDGLPLAEGLDDGRDVKDIELYKQQVKALFKNLAIRQNEPSRMSIETGPYVFHAYISIFSTSSFVSLHFFPFFPIPRSTPTNRRSNPRPS TTFYDMAPIRGILAMQRAAMVRRHADKLGVGFRSLSTQAASNSGAPQPTPPPPPPEKTHFGGLSDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKG TDWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERNNLEIA RKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPSSDTVEVSVVDGTTFLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	0	1
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	3.9	0.9239
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	5.7	0.9126
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	6.0	0.9043
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10000030 [exp]	6.7	0.8507
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	7.1	0.8852
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	10.6	0.9012
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	11.5	0.8691
AT1G31780			unknown protein		Lus10037280 [exp]	12.5	0.8532
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	13.0	0.8644
					Lus10037878 [exp]	13.3	0.8479

Compare expression of checked genes

Lus10015808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.