Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42710 199 / 1e-62 Ribosomal protein L1p/L10e family (.1) AT3G63490 95 / 3e-23 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036988 [exp] 291 / 9e-99 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 187 / 9e-56 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004691 [exp] 144 / 5e-43 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1) Lus10005337 [exp] 100 / 4e-25 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10039589 [exp] 100 / 4e-25 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143000 [exp] 220 / 6e-71 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1) Potri.001G262400 [exp] 107 / 6e-28 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.009G057100 [exp] 104 / 8e-27 AT3G63490 427 / 3e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10015809 pacid=23167706 polypeptide=Lus10015809 locus=Lus10015809.g ID=Lus10015809.BGIv1.0 annot-version=v1.0 ATGGACGCCATTCGCCAAGTCAAGATTGTTCGGGGCACTTTAACTTTGCCACATGGGGGAGAGAAGGTTCTGAAAGTGGTGTTCTTTGCTGAAGGAGCAG AGGCAGAAGAAGCTAGAGCTGCAGGTGCCGACATTGTTGGAGGCATCGAACTTATTGAAGAAATTGCAAGTACTGGCAAGGTGGACTTCGACAAATGTTA TGCAACTCGTCAGTTGTATCCCCGGGTTGCCAAGATTGCAAGGATTCTTAACCGTCATGGCTTGATGCCTGATGCAAAGCAAGGCACTGTTGTTAGCGAT GTAACTAGGGCAGTAAAAGCAGCAAAGCAGAATCAGATTAAGTTCAGAATGGACAAGTCATCCATCGTTCATGTGGGACTTGGAAAGGCAAGTTTCAGCG AAGAGTCCCTTCGTGAGAACATTGGTGCTTTTATGAATGCCCTTCTGCAAGCAAAGCCTGCTGGCTTGAAGAAAAGTAGAGAGAGATGTATGTTGGCTCT CCTAGACTGTAATTTCCTCTCTTTTCAAGGGAAGCTACCGAAAGAGAAACAGAGTTTAAAGTGA
AA sequence Show only first row Show all	>Lus10015809 pacid=23167706 polypeptide=Lus10015809 locus=Lus10015809.g ID=Lus10015809.BGIv1.0 annot-version=v1.0 MDAIRQVKIVRGTLTLPHGGEKVLKVVFFAEGAEAEEARAAGADIVGGIELIEEIASTGKVDFDKCYATRQLYPRVAKIARILNRHGLMPDAKQGTVVSD VTRAVKAAKQNQIKFRMDKSSIVHVGLGKASFSEESLRENIGAFMNALLQAKPAGLKKSRERCMLALLDCNFLSFQGKLPKEKQSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015809 [exp]	0	1
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	3.6	0.8211
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	5.7	0.8196
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10040718 [exp]	9.8	0.7920
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	14.0	0.8038
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	14.5	0.7972
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	21.6	0.7814
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10016425 [exp]	21.9	0.7300
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	27.0	0.7963
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	27.1	0.7365
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	27.2	0.8004

Compare expression of checked genes

Lus10015809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.