Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42710 90 / 5e-21 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036988 [exp] 306 / 1e-104 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10004691 [exp] 125 / 8e-36 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 127 / 9e-34 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10036985 [exp] 124 / 7e-33 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143000 [exp] 62 / 2e-11 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015810 pacid=23167711 polypeptide=Lus10015810 locus=Lus10015810.g ID=Lus10015810.BGIv1.0 annot-version=v1.0 ATGTCAGTGACGAAGGTCCTGTTCTCCCAAGCCCGTCGCCACTTCCCTGCCAGGGTTCCCTTCCACCTCCATTCCTCTCAGTCCGTGATATCTCGGAGTT GGTTTTCCTCTGATTCGGACCCCAATGGAACTCCAACGCCGGCTCCGGATCCACGAAGTCAACCTGTCCTCGTCCAGCCAGTTTCCTACTCACCGAAGCC AAAGGAACCGACGGCGGAGACAGATAAAGAATCTTCGACGAATGCTCAGCCTCCTCCTCCGCAGCAGTTCTCAAGACAGCCGCGAGAATTCCAAAATTCG TCGGAGGCTCGGACGAATTGGAGTCGGGAGGACGCCAGGTATGTGAAAGACGCGCCGTTCGTTGTACCAGTTTCGTATGCGCCTCGTGTGGCGCCCTTGC CGGAGGATAAGGTTGAAGGTGAAGTGCACGAGAGTGCAAAGGACGGCGAGGACATGAAGACCGAGGTTCGCCGGGTTGAAACGGAGAATAGGGCTATGAG AAGGATTTTGAGGATGGAGGAACAAACAGAGCAGGAGGTGAAGGATTGTGAGGAGGGAGGACCAAACAGAGCAGGCTGTTGTGCCTTTTCCTAG
AA sequence Show only first row Show all	>Lus10015810 pacid=23167711 polypeptide=Lus10015810 locus=Lus10015810.g ID=Lus10015810.BGIv1.0 annot-version=v1.0 MSVTKVLFSQARRHFPARVPFHLHSSQSVISRSWFSSDSDPNGTPTPAPDPRSQPVLVQPVSYSPKPKEPTAETDKESSTNAQPPPPQQFSRQPREFQNS SEARTNWSREDARYVKDAPFVVPVSYAPRVAPLPEDKVEGEVHESAKDGEDMKTEVRRVETENRAMRRILRMEEQTEQEVKDCEEGGPNRAGCCAFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015810 [exp]	0	1
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	2.4	0.9302
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	7.1	0.8913
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	19.7	0.8771
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	20.0	0.8623
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	20.6	0.8778
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	23.1	0.8691
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	25.6	0.8766
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	26.5	0.8452
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	26.5	0.8633
AT5G48240			unknown protein		Lus10041095 [exp]	26.8	0.8609

Compare expression of checked genes

Lus10015810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.