Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 727 / 0 unknown protein AT2G03430 72 / 8e-14 Ankyrin repeat family protein (.1) AT5G57740 63 / 6e-10 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G25600 62 / 1e-09 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G37500 62 / 2e-09 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G13530 59 / 1e-08 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT3G04710 58 / 2e-08 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G32500 57 / 6e-08 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G14255 56 / 1e-07 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G26650 55 / 2e-07 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036990 [exp] 1062 / 0 AT5G14230 510 / 5e-174 unknown protein Lus10022339 [exp] 774 / 0 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 766 / 0 AT5G14230 962 / 0.0 unknown protein Lus10036989 [exp] 446 / 7e-153 AT5G14230 224 / 2e-68 unknown protein Lus10002621 [exp] 75 / 5e-14 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003748 [exp] 73 / 4e-13 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10020272 [exp] 73 / 5e-13 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10037694 [exp] 72 / 1e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 71 / 4e-12 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057300 [exp] 984 / 0 AT5G14230 843 / 0.0 unknown protein Potri.001G333600 [exp] 840 / 0 AT5G14230 975 / 0.0 unknown protein Potri.011G151300 [exp] 573 / 0 AT5G14230 568 / 0.0 unknown protein Potri.013G062000 [exp] 100 / 1e-21 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 87 / 1e-17 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 71 / 3e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 72 / 7e-13 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 72 / 1e-12 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.002G213200 [exp] 69 / 7e-12 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.012G043000 [exp] 65 / 2e-10 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10015811 pacid=23167724 polypeptide=Lus10015811 locus=Lus10015811.g ID=Lus10015811.BGIv1.0 annot-version=v1.0 ATGCCGCTGTTCAGCGACTCGGCTACCGTCGGACTCCTCGCTGGGAAACAACAGGTTACCGTCTTCGTCAGCTCCGGCCCGCTCTACCTTTCCGCCGCCG GCAAGAAAGTCTTCCACCACGTAGATTACGGAACGCAGGTCTCGCAGCGCTTAGTCGATGCGGCACACCGCAACGACACGAATTCAGCGATCGGATGCCT CGATGATCCGTTCTGCGATGTCAACTTCATCGGCACCGTCAGCCTCCGGTCTCGGAAGACGGAGGTCGTGCTGAACGGCGAGTCCGCTCACGAGGTCCGA TTCGATTACGAGGAGTTCAGGACTGACGTCACCGCTCTCTTCCTTGCCGCTCACGCTGGAAACTCGCCTCTTGTCAGGAAATTGCTGAGTCTCGGAGCCA ACCCGAATCAGAAACTGTTCCGAGGCTACGCTACAACTGCAGCGGTAAGGGAAGGCCATTTGGAGATAGTGGAGGCGGTAATGAAAGCAGGAGCGTCTCA GGAGGCTTGTGAGGAAGCTTTAATGGAAGCAAGCTATTTCGGTCAAGCTAGGCTGGCAGAGATACTGATGAGCTCCGATCTAATACGTTCCAGAGTAGCT GTTCATGCTCTAGTCTCAGCTGCCTGCAGGGGTTTCGTCAATGTCGTGGATGCGCTCCTTAAGGCATTTCATCGAACATGTTGCTGTAGAGTAGATGCCA ACGCCATGGATCGGATCCTGCTTCAATCTTCCAAGCCGATGCTTCACACGAACGTTTACAGTAACGCTCTTGCGGCCGCCGTTGTTAGCAGACAAATCTC TGTAGTCAGACTGCTCTTGCAGGCAGGGGTTAGAGTGGACACCAAGGTGAGAATTGGCGCGTGGTCTTGGGACATGGAAACCGGGGAAGAAATCCGTGTC GGATCGGGATTAGCCGAAGCCTACTGCGTCACATGGTGCGCAGTGGAGTATTTCGAGTCCACGGGAGTTATCCTGCGCATGCTCCTCGGCCATCTCCTCC CTAACGTAAGACATCTGGGAAGGACTCTGATTCACCACGCTATCCTCTGCAACAATGCCGAAGCGGTTAAAGTCCTCATAAACGTCGGCGCAGACGTGGA ATATCCAGCCGTAACTTCAAGAAGCCAAGTCCGGCCGATTCACTTAGCGGCGAGGCTCGGATCTGCGAGAGTCCTCGAGCAGTTGATCACCGCCCCCGCT GCCACCAACGTCGATTCCATGACAAACTCCGGTGAGACTGCTCTGATGATCTCTGCAAAGTATAAGCAAGAGGAATGCCTGAAGATTTTAGCATCTTCCG GTGCCGATTTCGGTTTGCTCGATTCCGATGGCGATTCGGTTGTGTCGATCGCGAGGAAGGGAAATTGGGAGCTAGAGTTTCAACAGGCGGTGATGGAGGT GATTCGGTCGGGGAAGAGTTTGAAATCGAGCAGTTTTGCGGTTTTCTCGCCGTTAGCGTTCTCGATTCGAGCGATGGATCTCCACGCGCTGAAGAAACTG ACGGAGAAAGCGGATGTGGATCTCGATGAACAGGACGGAGATGGTTTTACTGCTCTCATGGTGGCCGCTGCCGGAGGCTACATCGACGCTTTCAGACTGC TTCTCCAAGCAGGAGCGGACGTGAAATTGAGGAACAATAGGGGAGAAACGGCGATGAATTTAGCGGAATCAAATCGAAACCGGGTCGAATCGTTCGAGAA AGCTCTGGTCCAGTACGGATTCTACCAAATGAATTGCTCAATTGTCGGAAACAACGCCCTGCATCGCGCCGCCGTGAGAGGCGAGCTAGGGTTAGTCCAG ACGCTAATCGCACAGGGCTGCGACGTGAACGCCTCCGACGGCGACGGATACACCCCGCTAATGCTCGCGGCGAGAGGCGGCCATGGAAAAATCTGCTCGC TCCTCATCTCAGCAGGAGCGATTGTCGATTTCAAGAACGAGAGGAACGAGACAGCGCTGCTTCTAGCGAGGAAGAACGGCGGCGGCGGTGGAGGAGAGGC GGCGGAAGTGATTTTAGACTACAAGGCTCGGGAGATGGTTTTGGAAGGCGGGAGGTTGAAGAAGCATACGAGGAGTGGGCTAGGGAAGCCCCAATACAAG GTGGTGGAGATGGTTCCCGCAGAGGGGGTTCTACGGTGGCAAAAGTGGTGGTGGTGGTGGGTGAAGACGAGCGTGGTGTGTAAGGAGGCGAAGGTTGGTC CGGCAACAAAGTTCCGGTGGAACAGGCGGAGGGCGGCGGACTTGGAGGAGCCCGGGTTGTTTCATGTGGTGACTACGAAGGGGAAAGTTGTTCATTTTGT TTGTGAAGACGGTGGGGATGAGATGGCGGAGCTTTGGGTTAGAGGGATTAAAATCATCACTCGGGAAGCCATTTTTGGCAAGTGTTAG
AA sequence Show only first row Show all	>Lus10015811 pacid=23167724 polypeptide=Lus10015811 locus=Lus10015811.g ID=Lus10015811.BGIv1.0 annot-version=v1.0 MPLFSDSATVGLLAGKQQVTVFVSSGPLYLSAAGKKVFHHVDYGTQVSQRLVDAAHRNDTNSAIGCLDDPFCDVNFIGTVSLRSRKTEVVLNGESAHEVR FDYEEFRTDVTALFLAAHAGNSPLVRKLLSLGANPNQKLFRGYATTAAVREGHLEIVEAVMKAGASQEACEEALMEASYFGQARLAEILMSSDLIRSRVA VHALVSAACRGFVNVVDALLKAFHRTCCCRVDANAMDRILLQSSKPMLHTNVYSNALAAAVVSRQISVVRLLLQAGVRVDTKVRIGAWSWDMETGEEIRV GSGLAEAYCVTWCAVEYFESTGVILRMLLGHLLPNVRHLGRTLIHHAILCNNAEAVKVLINVGADVEYPAVTSRSQVRPIHLAARLGSARVLEQLITAPA ATNVDSMTNSGETALMISAKYKQEECLKILASSGADFGLLDSDGDSVVSIARKGNWELEFQQAVMEVIRSGKSLKSSSFAVFSPLAFSIRAMDLHALKKL TEKADVDLDEQDGDGFTALMVAAAGGYIDAFRLLLQAGADVKLRNNRGETAMNLAESNRNRVESFEKALVQYGFYQMNCSIVGNNALHRAAVRGELGLVQ TLIAQGCDVNASDGDGYTPLMLAARGGHGKICSLLISAGAIVDFKNERNETALLLARKNGGGGGGEAAEVILDYKAREMVLEGGRLKKHTRSGLGKPQYK VVEMVPAEGVLRWQKWWWWWVKTSVVCKEAKVGPATKFRWNRRRAADLEEPGLFHVVTTKGKVVHFVCEDGGDEMAELWVRGIKIITREAIFGKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14230			unknown protein		Lus10015811 [exp]	0	1
AT2G36210			SAUR-like auxin-responsive pro...		Lus10017018 [exp]	6.5	0.7495
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	13.2	0.7716
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	15.4	0.7684
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	24.8	0.7379
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10004141 [exp]	26.3	0.7148
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	33.4	0.6487
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	35.5	0.7258
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	37.5	0.7229
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	40.8	0.6461
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	41.8	0.7362

Compare expression of checked genes

Lus10015811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.