Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27900 1070 / 0 RNA helicase family protein (.1) AT3G26560 543 / 1e-179 ATP-dependent RNA helicase, putative (.1) AT1G32490 540 / 1e-179 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 535 / 1e-177 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 522 / 2e-170 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G47250 489 / 9e-164 RNA helicase family protein (.1) AT3G62310 486 / 7e-163 RNA helicase family protein (.1) AT4G18465 447 / 5e-148 RNA helicase family protein (.1) AT1G26370 432 / 5e-142 RID1 RNA helicase family protein (.1) AT4G16680 398 / 1e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036991 [exp] 1389 / 0 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 537 / 5e-177 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 513 / 3e-168 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 499 / 2e-163 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 463 / 3e-153 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 457 / 3e-145 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 410 / 2e-133 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 402 / 1e-130 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 318 / 9e-101 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057200 [exp] 1147 / 0 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.012G034200 [exp] 546 / 2e-180 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 545 / 2e-180 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 519 / 1e-171 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 520 / 2e-169 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 486 / 1e-162 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 479 / 5e-160 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 450 / 4e-149 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 427 / 6e-140 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.016G068900 [exp] 314 / 5e-94 AT2G35920 1474 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10015812 pacid=23167720 polypeptide=Lus10015812 locus=Lus10015812.g ID=Lus10015812.BGIv1.0 annot-version=v1.0 ATGGCGGCGCATCTTCCGATAGTCCAATTCGAAGAGCAAATCATCAGAACTGTCGAAGAAAATCGGGTAGTGGTCGTGATTGGAGAGACCGGTTCCGGGA AGAGCACCCAGCTCTCTCAGATGCTCCTCCGCCATGGCTACTCCAAGTCCGGAATCATCGGCGTTACTCAGCCCCGTCGAGTTGCTGCCGTCTCCGTCGC TAGGCGAGTTGCTCAGGAACTTGGCGTTAAGCTTGGGGAGGAAGTTGGTTATGCAATTCGGTTCGAGGATAGGACATCGGGATCGACACGGATTAAGTAC CTTACTGATGGAGTTCTTCTCCGGGAAAGTCTATCTGACCCCGAGCTTAGTCAATATTCGGTTATAATATTGGATGAAGCCCATGAGAGGAGCTTGAACA CGGATATTTTACTGGGACTGGTGAAGCGATTAACGAAAATGCGTGAATGCAAATTAAAAGTTCTGATCACATCTGCAACTCTAGATGGGGAGAAGGTGTC GGAGTTCTTTTCGGAGTCCCCAATTCTCAACGTCCCCGGGAAGCTGTTTCCTGTGGAAATAGTATACAGCAGGGAGCGTCCCATAAGTTATCTCGAGTCT TGCCTGAGAACAGCTCTTGATATACATCGTAAGGAACCTGAAGGGGATGTTCTAATATTCATGACTGGACAGGATGATATTGAGAAGCTAGTTGCAAAAT TGGAGGAAAAGATTCGAGGCCTAGAGGAAGGTTCCTGTATGGATGCAGTTATCCTTCCTCTTCATGGTTCTTTGCCTCCTGAAATGCAGGTGCGTGTCTT CAGTCCTGCTCCTCCAGATTGTAGACGATTTATCGTTGCTACCAACATTGCTGAAACTTCTTTGACGGTTGACGGAGTAGTGTATGTTATCGATTCGGGT TATGTAAAGCAAAGGCAGTACAATCCATCAACTGGCATGTATTCTCTTGATGTTGTTCAGATCAGCAAAGTGCAAGCAAACCAGCGTGCAGGAAGAGCAG GAAGGACACGTCCGGGGAAATGCTATAGGTTGTACCCTTCCTCAGTGTATCAAGATGAATTACTTGACGTAACTGTTCCTGAGATACAGCGAACTTCACT CGCTGGCACTGTTCTTTACTTGAAATCACTGGACCTTCCAGACATTGACATTTTAAAGTTTGATTTCCTGGATTCACCTTCTGCTGAATCGCTGGAAGAT GCTTTAAAGCAACTTTATCTTATTGACGCTATAGATGAAAACGGAGCCATCACAACTGTAGGACGAACAATGGCTGAACTGCCACTAGAGCCATCACTTT CCAGAACATTAATGGAAGCAAACGAGAATGGTTGCTTATCCCAGGCTTTGACTGTTGCTGCTATGTTGTCAGCAGAAACTACATTGCTTCCTAATCGAAG TAGCAGAAACAATGAAAAGAAGAGGAAACAAGAACCTTTAGACCTTCCTGATGGGTCTGGTTTTGGCGATCACATCCAGATGCTACAGATCTATGAGCAG TGGGATGAGTACGACTATGACATCAGGTGGTGCAGGGATCATGGCTTGCAGGAGCGAGGAATGGTTTTTGTTAAAGATGTCCGTAAACAGTTGTGTCAAA TAATGCAGAAAATCGAAAAGGGTTCAACAGACGTTAGAGCAACTCGCAGATACAGAGATGGCCAACATGATTGCAAGAATCTAAGGAAGGCCTTGTGTGT AGGCTATGCAAATAAGCTTGCAGAGAAAATGATTCATCACAATGGCTACCGAACTATAGGTTTCAAACCCCAGCTTGTTCAGGTCCACCCATCTTCTGTG CTGAAACCTGACGACGATGGTATGTTCCCAAACTATGTCGTGTACCACGAGCTCATCGCTACCTCGCGTCCGTTCATGAGGAGCATTTGCTCTGTAGAGA TGAGATGGGTCGTCCCGATTCTCAAGAAACTCGAAAAGCTTGACGTCAACAAACTAAGCGGAGGGCTTCATCGCAATGTTGGAGGTAACGAGAAGACCTT AGAGTTGGTGGAGAAGAAGCCTGTTGTTGCTGCAATTCCCAATGATAGCGAGAGCAGAGTCCTAGCTGCTCGTGAACGGTTTCTTGCTCGAAAAGGGAAC AAATGA
AA sequence Show only first row Show all	>Lus10015812 pacid=23167720 polypeptide=Lus10015812 locus=Lus10015812.g ID=Lus10015812.BGIv1.0 annot-version=v1.0 MAAHLPIVQFEEQIIRTVEENRVVVVIGETGSGKSTQLSQMLLRHGYSKSGIIGVTQPRRVAAVSVARRVAQELGVKLGEEVGYAIRFEDRTSGSTRIKY LTDGVLLRESLSDPELSQYSVIILDEAHERSLNTDILLGLVKRLTKMRECKLKVLITSATLDGEKVSEFFSESPILNVPGKLFPVEIVYSRERPISYLES CLRTALDIHRKEPEGDVLIFMTGQDDIEKLVAKLEEKIRGLEEGSCMDAVILPLHGSLPPEMQVRVFSPAPPDCRRFIVATNIAETSLTVDGVVYVIDSG YVKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSSVYQDELLDVTVPEIQRTSLAGTVLYLKSLDLPDIDILKFDFLDSPSAESLED ALKQLYLIDAIDENGAITTVGRTMAELPLEPSLSRTLMEANENGCLSQALTVAAMLSAETTLLPNRSSRNNEKKRKQEPLDLPDGSGFGDHIQMLQIYEQ WDEYDYDIRWCRDHGLQERGMVFVKDVRKQLCQIMQKIEKGSTDVRATRRYRDGQHDCKNLRKALCVGYANKLAEKMIHHNGYRTIGFKPQLVQVHPSSV LKPDDDGMFPNYVVYHELIATSRPFMRSICSVEMRWVVPILKKLEKLDVNKLSGGLHRNVGGNEKTLELVEKKPVVAAIPNDSESRVLAARERFLARKGN K

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	0	1
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	3.2	0.9318
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	6.6	0.9228
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	7.3	0.8900
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	7.7	0.9169
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	10.2	0.8931
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	11.0	0.9024
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	12.4	0.9011
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10021767 [exp]	13.0	0.9018
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	13.4	0.8991
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	13.5	0.9089

Compare expression of checked genes

Lus10015812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.