Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13677 86 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036992 [exp] 153 / 2e-50 AT3G13677 81 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406200 [exp] 110 / 2e-33 AT3G13677 81 / 1e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015813 pacid=23167625 polypeptide=Lus10015813 locus=Lus10015813.g ID=Lus10015813.BGIv1.0 annot-version=v1.0 ATGGATATCACACCCACCGTCGCCGTCGCCGCCCCTCAATCCTCTCACTTGTGGAAGCAAATGGGTAGCGAGGAGAAGAAGGCCGTGATCCAGGAAGAGA TGAAGAGGATGAATAAGCTTCCGGCAAACAGCAACTACGCCGCCCACCGCTTCCGAGTGCTCAACAAAATCCTGCAGCTCCTCTCTGTACCCAGGACCAT CTCTCAGGATGAGGAGCTCGAGTTGCTCTTCGCCGGCCTCCGTCTGTAA
AA sequence Show only first row Show all	>Lus10015813 pacid=23167625 polypeptide=Lus10015813 locus=Lus10015813.g ID=Lus10015813.BGIv1.0 annot-version=v1.0 MDITPTVAVAAPQSSHLWKQMGSEEKKAVIQEEMKRMNKLPANSNYAAHRFRVLNKILQLLSVPRTISQDEELELLFAGLRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13677			unknown protein		Lus10015813 [exp]	0	1
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	1.4	0.8477
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	3.7	0.8144
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	7.1	0.7921
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	10.8	0.8097
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	11.8	0.7857
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	13.1	0.7981
AT1G65720			unknown protein		Lus10020795 [exp]	13.7	0.7496
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	18.7	0.7906
AT5G08060			unknown protein		Lus10034681 [exp]	18.8	0.7653
AT2G25720			unknown protein		Lus10032479 [exp]	20.5	0.7422

Compare expression of checked genes

Lus10015813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.