Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67550 795 / 0 URE urease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036993 [exp] 515 / 1e-172 AT1G67550 817 / 0.0 urease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177900 [exp] 834 / 0 AT1G67550 1345 / 0.0 urease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00449 [flax] [poplar] Urease_alpha Urease alpha-subunit, N-terminal domain CL0034 [flax] [poplar] PF00699 [flax] [poplar] Urease_beta Urease beta subunit CL0034 [flax] [poplar] PF00547 [flax] [poplar] Urease_gamma Urease, gamma subunit CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10015814 pacid=23167645 polypeptide=Lus10015814 locus=Lus10015814.g ID=Lus10015814.BGIv1.0 annot-version=v1.0 ATGAAGCTGACGCCGAGAGAAGTGGAGAAACTTGCGCTCCACAACGCAGGATTCCTGGCCCAGAAGCGCCTAGCTCGTGGCCTCAAGCTCAATTACACTG AATCCGTCGCTCTTATTGCTTCTCAGATTTTGGAGTTTGTAAGAGATGGTGAAAAGAGTGTGGCAGAACTTATGGATGTTGGGAGACAGCTTTTAGGAAG GAGACAAGTGCTTCCAGCAGTTCCCAATTTGCTTCATTCTGTACAGGTTGAAGGCACTTTTCCTGATGGAACCAAGCTTATAACGGTTCATGATGCTATT GCTTGTGAGAATGGGGATCTCCAGCTGGCTCTGCACGGATCTTTTCTCCCAGTTCCTTCAACCGACAAGTTCCCCGGAATCGAAAAGGCCGAGTTCCCCG GGGAGATAATCTACGGGGAGGGGACCATAACTCTGAACCCGGGAAGGAAGGCTGTGATCTTGAAAGTTGTTAATACAGGAGATAGGCCAGTTCAGGTTGG CAGCCATTATCATTTCGTCGAGACGAATCCTTACTTGCTCTTTGATCGGTTGAAGTCACTCGGGATGCGCCTCAACATACCTGCAGGAACGGCTACTAGA TTCGAGCCAGGGGAATGTAAGAGTGTTGTACTTGTTAGCATTGCGGGTAAGAAGGTGATCAGAGGTGGAAATGGTATCGTTGATGGTCCTGTTAGCGATT CCAGTAACGCTGTCGTATTGGAGGTTGTAAATAGCAGAGGATTTGGGCATAAAGAAGAAGCTAATGCCAGTGGAATCTACAAGGCTGATATTGGCATCAG AGGTGGCCACATTGCTGCCATTGGCAAAGCTGGAAACCCTGATGTTATGGATAGTGTTCATGGCGATATGATCATTGGCGTTAACACAGAGGTAATTGCT GGAGAGGGTATGATCATAACCGCAGGAGCGATCGACTGTCACGTCCACTTCATCTGTCCTCAGTTAGCACACGAAGCAATCTCGAGCGGGATTACAACAC TCATCGGTGGTGGAACTGGACCTGCCGACGGCACGCGCGCAACTACTTGTACTCCTGCTGCTTCACAAATGAAGCTTATGCTGCAATCCACTGATGACCT GCCTCTAAACTTTGGCTTCACCGGAAAGGGTAATGCCGCTAAACCTGAAGAGCTCCATGACATAATTAAAGCCGGGGCAATGGGTCTGAAGTTGCATGAA GACTGGGGAACTACTCCAGCTGCAATAGACAATTGCTTAACAGTAGCGGATGAATACGATATCCAGGTCAATATTCATACTGACACCTTGAACGAATCTG GATTCGTGGAGCACACTATTGCTGCATTTAAAGAAAGGACCATTCATACATATCACAGTGAAGGTGCAGGTGGTGGCCATGCTCCAGACATTATCAAAGT GTGCGGTGTTAAGAACGTCCTTCCCTCGTCAACGAATCCCACGAGACCTTTCACTTCAAATACGATCGACGAGCATCTCGACATGTTGATGGTTTGCCAT CACCTTGACAAGGACATACCCGAAGACGTAGCTTTCGCTGAATCGAGAATTCGAGCTGAGACAATTGCTGCAGAGGACATATTGCATGATATGGGGGCAA TCAGCATCATATCTTCTGATTCACAAGCCATGGGCCGGATCGCAGAGGTCATTAGCAGAACATGGCAGACTGCCCACAAGATGAAATCGCAGAGGGGAAC GATTGACCCTACTGGATCAGACAACGATAACTTGCGAATCAAGCGATATGTTGCTAAGTACACCATAAACCCTGCCATAGCAAATGGAGTTGCAGAACAC ATCGGTTCAGTCGAGGTAATTCTCGATTCGAGTAAATTACCTGAGTTGAGTTCGAAAGAACCACTGATCCGCTTTCTGCAGGTCGGAAAATGGGCTGATC TTGTTCTGTGGCAACCCGCATTCTTTGGAGCTAAACCGGAGATGGTGATCAAAGGTGGTGTCATTGCATGGGCTAACATGGGTGACCCAAATGCTAGCAT CCCAACACCTGAACCGGTGATCTCGAGGCCAATGTTTGGAGCATTTGGCAAGGCCGGAAGTGAAAACTCCATTGCATTCGTCAGCAAGGCAGCCTTAGAT AACGGGGTCAAAGCCTCGTACGGGCTCGACAAGCGAGTCAAGGCCGTGGGGAACGTGAGGAAGCTAACGAAACTCGACATGAAGCTCAATGATTCACTCC CGGAAATTACAGTCGATCCCGAGACTTACACTGTCACAGCTAATGGTGAAGTTTTAACTTGCTCTGCAGCCACTACAGTTCCTCTTTCAAGGAACTACTT TATGTTCTAG
AA sequence Show only first row Show all	>Lus10015814 pacid=23167645 polypeptide=Lus10015814 locus=Lus10015814.g ID=Lus10015814.BGIv1.0 annot-version=v1.0 MKLTPREVEKLALHNAGFLAQKRLARGLKLNYTESVALIASQILEFVRDGEKSVAELMDVGRQLLGRRQVLPAVPNLLHSVQVEGTFPDGTKLITVHDAI ACENGDLQLALHGSFLPVPSTDKFPGIEKAEFPGEIIYGEGTITLNPGRKAVILKVVNTGDRPVQVGSHYHFVETNPYLLFDRLKSLGMRLNIPAGTATR FEPGECKSVVLVSIAGKKVIRGGNGIVDGPVSDSSNAVVLEVVNSRGFGHKEEANASGIYKADIGIRGGHIAAIGKAGNPDVMDSVHGDMIIGVNTEVIA GEGMIITAGAIDCHVHFICPQLAHEAISSGITTLIGGGTGPADGTRATTCTPAASQMKLMLQSTDDLPLNFGFTGKGNAAKPEELHDIIKAGAMGLKLHE DWGTTPAAIDNCLTVADEYDIQVNIHTDTLNESGFVEHTIAAFKERTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCH HLDKDIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIAEVISRTWQTAHKMKSQRGTIDPTGSDNDNLRIKRYVAKYTINPAIANGVAEH IGSVEVILDSSKLPELSSKEPLIRFLQVGKWADLVLWQPAFFGAKPEMVIKGGVIAWANMGDPNASIPTPEPVISRPMFGAFGKAGSENSIAFVSKAALD NGVKASYGLDKRVKAVGNVRKLTKLDMKLNDSLPEITVDPETYTVTANGEVLTCSAATTVPLSRNYFMF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	2.0	0.9351
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	2.4	0.9351
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	3.6	0.9410
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	3.7	0.9137
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	6.0	0.9181
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	7.7	0.9124
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	7.7	0.9218
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	9.2	0.9265
AT2G42700			unknown protein		Lus10017646 [exp]	10.2	0.9021
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	10.4	0.9341

Compare expression of checked genes

Lus10015814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.