Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 154 / 3e-44 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 148 / 1e-42 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 143 / 3e-40 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 141 / 1e-39 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 129 / 2e-35 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 117 / 5e-31 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 107 / 4e-27 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G19010 102 / 1e-25 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 100 / 7e-25 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G65060 87 / 2e-20 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036994 [exp] 258 / 3e-84 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 132 / 4e-36 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 131 / 1e-35 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 130 / 1e-35 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 130 / 1e-35 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 130 / 2e-35 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 130 / 2e-35 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026544 [exp] 129 / 5e-35 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 126 / 4e-34 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033600 [exp] 174 / 8e-52 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 163 / 6e-48 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 150 / 5e-43 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 144 / 7e-41 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 142 / 5e-40 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G095000 [exp] 142 / 7e-40 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 142 / 8e-40 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094900 [exp] 139 / 6e-39 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 129 / 5e-35 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 127 / 1e-34 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10015815 pacid=23167624 polypeptide=Lus10015815 locus=Lus10015815.g ID=Lus10015815.BGIv1.0 annot-version=v1.0 ATGGATAGAATCGAATTGAAGAAGATGCTGAAAGCAATTCAGGAACATCGTGTTAGGCACGTGGCGGCAGCTCCGCCGCTCGTAATATCTCTGATCAACG AAGATCGGAAGGTGGTCGCCGGCTACGATTTGAGCTCCCTCGAAGTTGTAGCCTGCGGTGGCGCCCTACTGGGAAGAGATGCAGCCACGCTCTTTACCAA GCTGTTTCCAAGTGCTCTGCTCGTCCAGAATCTTTATCCTGATGGGACAAGGATTCTGGTTCCTGTAATGATGCTTGCAGGCTATGTTGGTGACGAGGAA GCAACTGCTAAGGCTTTGGATTCGGAAGGATGGCTGAGAACTGGAGACCTCTGCTACATTGACGACCAAGGGTTCCTTTTTATGGTCGACAGGATCAAGG AACTGATCAAATGCAGAGGCTATCAGGTAGCTCCAGCTGAGCTTGAGCATTTGCTTCAGTCACATCCAGAAATTCTCGAGGCAGCAGTCGTCCTGCCAAG TTCCGGTGGCGTTCATGGCAAGGCAGAATGGAAGCACCATGAGTGA
AA sequence Show only first row Show all	>Lus10015815 pacid=23167624 polypeptide=Lus10015815 locus=Lus10015815.g ID=Lus10015815.BGIv1.0 annot-version=v1.0 MDRIELKKMLKAIQEHRVRHVAAAPPLVISLINEDRKVVAGYDLSSLEVVACGGALLGRDAATLFTKLFPSALLVQNLYPDGTRILVPVMMLAGYVGDEE ATAKALDSEGWLRTGDLCYIDDQGFLFMVDRIKELIKCRGYQVAPAELEHLLQSHPEILEAAVVLPSSGGVHGKAEWKHHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015815 [exp]	0	1
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	3.2	0.6828
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	20.0	0.6804
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	25.0	0.6663
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	55.7	0.6276
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007044 [exp]	75.7	0.6003
					Lus10029490 [exp]	79.5	0.6070
AT1G01760			adenosine deaminases;RNA bindi...		Lus10017815 [exp]	94.9	0.5525
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	97.5	0.6147
AT4G01575			serine protease inhibitor, Kaz...		Lus10010287 [exp]	126.6	0.5952
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036714 [exp]	128.6	0.5857

Compare expression of checked genes

Lus10015815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.