Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 842 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 493 / 5e-168 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT5G64960 298 / 2e-92 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G10270 297 / 6e-92 CDKC;1 cyclin-dependent kinase C;1 (.1) AT3G48750 279 / 6e-88 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 280 / 9e-88 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 267 / 4e-83 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G18040 268 / 3e-82 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 262 / 5e-80 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 257 / 8e-79 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036995 [exp] 1329 / 0 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 304 / 1e-94 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 300 / 3e-93 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 297 / 3e-87 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 263 / 2e-78 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10038755 [exp] 253 / 2e-78 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10023050 [exp] 259 / 4e-78 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10032422 [exp] 258 / 1e-77 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10040593 [exp] 253 / 1e-77 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056900 [exp] 966 / 0 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 952 / 0 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 578 / 0 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 577 / 0 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 296 / 2e-91 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.004G133500 [exp] 287 / 7e-91 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G003700 [exp] 281 / 1e-85 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.002G003400 [exp] 265 / 3e-82 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.001G088000 [exp] 265 / 2e-80 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.005G257500 [exp] 258 / 6e-80 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015816 pacid=23167682 polypeptide=Lus10015816 locus=Lus10015816.g ID=Lus10015816.BGIv1.0 annot-version=v1.0 ATGGCGGCTGGGAGACCTGGAGTGTACCGTGATTATGAGTTCAGGGAACGGGAGGCGGGATTTGAGCTGTCGAGGAAGGATTCGGGGTACTCTAAGGAGA GGTTTGATAGGAATGGGAATGGGAATATAGAATATGATCGTGAACGTGTGCGAGTTCGTGACTTGAAGGATAGGTCTAATGGTAGAGTTAGACAGAGAGA TACGAAGGAGAGGGAGCTTGTCAACGGTGGGGATCGTTGTTCATCTAGCAGGAGTAATTCAGGCAGTAGTGGTAGTGGTGGACGTGAAGGTGTCAGGGGG CCCCGTGGGTGTGACTCTGCAGCTAAGGTAGTGGATAAAGAGCCTGGCGAATTGTCTAGTGATAGTGGGTCTGATGGTGGGATCGAGTCGGGATCACAGG TCTATGAAGGCAGGGAGGTTTCAAAGGTGGTAGAGAATGGGGAAACAAAGGCTCCTGTTGAGAAGAAGAGGAAATTTTCTCCTATTGTGTGGGATAGGGA TGCCAAGGCAGTGAGTAATTCATCAGAAACAAGGGTTCCTAAGGAGGGGGTAACAACTCTACCTCCTCCACCTCCCCTTCCCATCCATAAGCTACCACGT GAAATATCTGTTGCTAATGGAGAGGTATCTGTGAGTATATCGCCTGCCAGAAGTTATAAGAATGACAACTCGCAGTCATCATCTCCTGTCAAGGATCCAG ACGCTAAACCTTCATGCGACCACGGGTCTCATGTAGAACCTGATGCTCCGATGTTAATGTTGGATGATCCCAAACACTATGAAGGTCTCCAACCAGGGGC TTTGGAAGATGAAGATTATGTCCCAACTCGGCATATTTCATCCTCAAGATGGGCAGCTGGGAACAACTCTCCAGTTGATGAAGGTGAAATTGTGGAAGAT CAGGAAATGCCTAAAAGAAGGAAGAAGGTGCCATATCCAGACTCGTCTGATTCCAAAGTGCGAAGTAAGTCGGTGACTCCCGAGCTTGGGGACCGGAAGA GAGAAGGGTCTGTTGGAGCCAATGGTAGGTCATCAGCTTCTGATGAACCTGGATCTCGTCCTAGATCTTCAAGTAGAGATGAGTATCCTAATAATGATTC TGAGAGGGATGAATATATGGAGGTTGACGGGGATCGAGAGTACAAGGATAGAAACAATGGCCACTTAGATACTGATTCGGAAGATGTTGACAGTTCTAGA GACACACCAGAACCTGCTGGTCCTCCTCAGAGAAGTATAAGCATGCTTAGGGGCTGTAGGAGTGTTGATGAGTTTGAGAGACTTAATAAGATAGATGAAG GTACATATGGTGTTGTATTTAGAGCCAAAGATAAGAAAACTGGCGAAGTTGTGGCCTTGAAAAAGGTAAAAATGGAGAAAGAACGAGAAGGTTTTCCTCT TACTTCTTTGAGGGAGATAAACATTCTCCTTTCCTTTCATCATCCTTCTATTGTTGACGTTAAAGAGGTTGTGGTAGGTAGTAGTCTGGATAGCATTTTT ATGGTGATGGAGTACATGGAGCATGATCTGAAAGGACTCATGGAGTCGATGAAGCAGCCATTTAGTCAGAGTGAAGTTAAATGCTTAATGTTGCAGCTTT TGGAGGGTACAAAGTATTTGCATGATAACTGGGTGCTTCATCGGGATCTGAAGACGTCAAATATACTACTAAACAACCGTGGTGAGTTGAAGATCTGTGA TTTTGGGTTGGCTCGTCAATATGGGAGCCCACTGAAGCCATATACTCACATGGTGGTTACTCTTTGGTACAGGGCGCCTGAACTTCTTCTTGGAGCTGAG CAGTATTCAACAGCAATTGACATGTGGTCGTTGGGCTGTATTATGGCTGAAATGCTATCAAAGCAACCTTTGTTCAATGGCAAAACAGAGGTTGATCAAC TTGACAAGATTTTCCGAATCCTTGGTACTCCAAATGAAACCATCTGGCCTGGATTTTCGAAGCTGCCAAGAGTCAAGGTTAATTTCGTTAAGCATCAGTA TAACCTGCTACGAAAAAAGTTTCCAGCGACATCTTTCACTGGTTCTCCGGTGCTCTCTGATGCCGGGTTTGATCTGTTAAACAAACTGCTTACCTATGAC CCCGAGAAGCGAATAACTGTTGATGCTGCTCTAAATCACGAGTGGTTTCGTGAAGTACCTCTTCCCAAGTCCAAAGATTTCATGCCAACATTCCCTGCTC AACATGCACAAGACAGACGTCTGAGGAGAGTAATGAAGAGCCCAGATCCGCTGGAAGAACAACGTAGGAAAGAGCTGCGGCAAGCAGAATTAGGAACTGG CGGATTATTTGGCTAG
AA sequence Show only first row Show all	>Lus10015816 pacid=23167682 polypeptide=Lus10015816 locus=Lus10015816.g ID=Lus10015816.BGIv1.0 annot-version=v1.0 MAAGRPGVYRDYEFREREAGFELSRKDSGYSKERFDRNGNGNIEYDRERVRVRDLKDRSNGRVRQRDTKERELVNGGDRCSSSRSNSGSSGSGGREGVRG PRGCDSAAKVVDKEPGELSSDSGSDGGIESGSQVYEGREVSKVVENGETKAPVEKKRKFSPIVWDRDAKAVSNSSETRVPKEGVTTLPPPPPLPIHKLPR EISVANGEVSVSISPARSYKNDNSQSSSPVKDPDAKPSCDHGSHVEPDAPMLMLDDPKHYEGLQPGALEDEDYVPTRHISSSRWAAGNNSPVDEGEIVED QEMPKRRKKVPYPDSSDSKVRSKSVTPELGDRKREGSVGANGRSSASDEPGSRPRSSSRDEYPNNDSERDEYMEVDGDREYKDRNNGHLDTDSEDVDSSR DTPEPAGPPQRSISMLRGCRSVDEFERLNKIDEGTYGVVFRAKDKKTGEVVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIF MVMEYMEHDLKGLMESMKQPFSQSEVKCLMLQLLEGTKYLHDNWVLHRDLKTSNILLNNRGELKICDFGLARQYGSPLKPYTHMVVTLWYRAPELLLGAE QYSTAIDMWSLGCIMAEMLSKQPLFNGKTEVDQLDKIFRILGTPNETIWPGFSKLPRVKVNFVKHQYNLLRKKFPATSFTGSPVLSDAGFDLLNKLLTYD PEKRITVDAALNHEWFREVPLPKSKDFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELRQAELGTGGLFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	0	1
					Lus10006006 [exp]	1.7	0.9387
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	2.4	0.9284
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	2.4	0.9336
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	8.2	0.9264
AT3G02420			unknown protein		Lus10034084 [exp]	10.2	0.8884
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	10.9	0.9170
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	11.1	0.8839
AT3G52905			Polynucleotidyl transferase, r...		Lus10008532 [exp]	11.2	0.8772
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	13.2	0.8966
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	14.1	0.8842

Compare expression of checked genes

Lus10015816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.