Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27880 434 / 1e-141 DEAD/DEAH box RNA helicase family protein (.1) AT4G35740 94 / 1e-19 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G60930 73 / 5e-13 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 72 / 6e-13 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G31360 69 / 8e-12 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 67 / 1e-11 RECQI1 RECQ helicase l1 (.1) AT5G27680 64 / 3e-10 RECQSIM RECQ helicase SIM (.1) AT1G67630 55 / 1e-07 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036983 [exp] 275 / 2e-82 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1) Lus10015820 [exp] 108 / 1e-24 AT1G67630 738 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10036982 [exp] 100 / 6e-22 AT1G67630 765 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10041840 [exp] 86 / 3e-17 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 82 / 4e-16 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10015467 [exp] 76 / 5e-14 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10026219 [exp] 69 / 5e-12 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 68 / 2e-11 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10034749 [exp] 67 / 2e-11 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056500 [exp] 524 / 3e-176 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G107400 [exp] 92 / 3e-19 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G015800 [exp] 76 / 6e-14 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.013G161200 [exp] 74 / 2e-13 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G019800 [exp] 70 / 3e-12 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 69 / 4e-12 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G055900 [exp] 64 / 2e-10 AT1G67630 837 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Potri.005G026400 [exp] 61 / 3e-09 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.012G063500 [exp] 43 / 0.001 AT5G08110 1190 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015818 pacid=23167667 polypeptide=Lus10015818 locus=Lus10015818.g ID=Lus10015818.BGIv1.0 annot-version=v1.0 ATGAAGGCGGCGGATGAAGCTGAAGCGGGAGGGCCGATCTGCGACGAGGAAGGTTTAGTCACGGAAATGACTCCGCAGAAGCCAAGTAAAGGCAGTGAGC TGATTCAGGAAGCGGTTTCTGCTGCTAGGGGTGAGCCCTCTGATGAGAGTTTGGTGAGTTTGTTGAGTTTGATGTACGGGTACAGTTCGTTTAGGGATGG GCAACTTGAAGCTATTAAAATGGTGCTTGATGGGAAATCGACCATGTTGGTTTTGCCCACTGGAGCTGGAAAATCACTTTGCTATCAAATTCCTGCCGTT ATTTTGCCTGGGATAACTTTAGTAGTAAGCCCGTTAGTCGCATTGATGATTGATCAGCTTAAACGGTTGCCTCCAGAGATTCAGGGTGGTCTTTTCTGTA GCAGTCAGTATGAAACTGATATAGTAAGCAAATACTTAGGCGACAATAACATCCCTGCAAAGAGCTACCACAGTGGTATTTTCTCAAAGGAGCGCAGCCG TATACAAGAGTTATTTTGTTGTAACAAAATTAGAGTGGAAGTTGCTTACACATATTTCTCGATGAAGGTTGTTGCAACGGTGGCATTTGGCATGGGGCTG GACAAGAGTGATGTTGGAGCTTTTGCCAGAAAGCCTGGAGGAATATGTTCAGGTGGAAATTCAGTTCTTAATAACTTGCTGGCACAAGAGCTGTTTCTAT GTGATGGAGTAGATGAATATGCAGTGAACAAGTTCCTCTCTCAAGTTTTTAGCAGTGGAACTGGCTCAGTAGGGAAGGTCCATTCGATTATCAAAGAATC TGCCTCTCGCAAATTCGATATGAAAGAAGAGGTGATGCTCACACTTCTAACACAGTTGGAATTGGGGGATGTGAAATACTTGCGCTTACTTCCTCAAGTA AATGTGACATGCACTTTGAGTTTCTACAAGACTTCACCAATGGAACTTGCTGCCAAGGATATCCTAGTATCTTCAATTTTGAAAAGCTGTGAAACTAAGC AAGGAGAATATGTTTTCGACATACCTTCGGTGGCAAATAGCATTGGCGTCTCTATTACAGAGTTATCAGATCACCTGATGAAGCTCAAGTGGAAAGGTGA AATAACATACGAGGTCAAAGATCCAGCCTTTTGTTATACAATTGTGGAACTCCCCAAAGACTTGTGCTCCCTTTCAGTACATCTCACCAAATGGTTGTCC GAAGTCGAACTCTGCAAGGTCAGAAGGTTAGAAGAAATCCACAGCGCTGTACAGTTTGCCGTGAATGACTGTAAAAAGACGCAAGGTTGCAAGGGCAGTG AGCACACTGTGTGCTTACAGAGAAGGATTCTGGACTACTTCAACGAAGAAGACACCAGCCACGAACCAAAGAGAGAATCGGCTCTCCAATGCAGCCCTTT TCTGCGAGCAGATATAAAGGTCTTTCTGCAGAGCAACTCACATACGGTGAAGTTTACTCCGCGAGCAGTGGCGAGAATCATGCACAGGATTGCCAGTCCA GCTTATCCTTCCTCCACTTGGTCTAGCACTCATTTCTGGGGAAGGTACTCTGGAACCGATTTTGAAGTGGTGATGGAAGCTGCCAAGGGAGAGCTAATCA AGTGTGCTGTGACCTACAACCCGGGTGGTGAAAATATTACAATTGGGATCCTGGTGGTTCAGCCGCACCTCATTCTGGCTGGTTCAACAGATCGGGTGGT TCCTTTTTTTCTGCAGATCGTAGGGGTTGAAGGTCACAATCCGAGTGGATACTGTTTGATTACGTCGAAGTTTATAGATTCTGTTCCTTTGTCATTCAAC AATGTCGAAGATTTGCACTCTGCAAAGAGATTGGCTTTGGACCAAGAGCTTGAGTCAGCCGATTTATCCACCCCAGAAGGAGAGATCAGTTAA
AA sequence Show only first row Show all	>Lus10015818 pacid=23167667 polypeptide=Lus10015818 locus=Lus10015818.g ID=Lus10015818.BGIv1.0 annot-version=v1.0 MKAADEAEAGGPICDEEGLVTEMTPQKPSKGSELIQEAVSAARGEPSDESLVSLLSLMYGYSSFRDGQLEAIKMVLDGKSTMLVLPTGAGKSLCYQIPAV ILPGITLVVSPLVALMIDQLKRLPPEIQGGLFCSSQYETDIVSKYLGDNNIPAKSYHSGIFSKERSRIQELFCCNKIRVEVAYTYFSMKVVATVAFGMGL DKSDVGAFARKPGGICSGGNSVLNNLLAQELFLCDGVDEYAVNKFLSQVFSSGTGSVGKVHSIIKESASRKFDMKEEVMLTLLTQLELGDVKYLRLLPQV NVTCTLSFYKTSPMELAAKDILVSSILKSCETKQGEYVFDIPSVANSIGVSITELSDHLMKLKWKGEITYEVKDPAFCYTIVELPKDLCSLSVHLTKWLS EVELCKVRRLEEIHSAVQFAVNDCKKTQGCKGSEHTVCLQRRILDYFNEEDTSHEPKRESALQCSPFLRADIKVFLQSNSHTVKFTPRAVARIMHRIASP AYPSSTWSSTHFWGRYSGTDFEVVMEAAKGELIKCAVTYNPGGENITIGILVVQPHLILAGSTDRVVPFFLQIVGVEGHNPSGYCLITSKFIDSVPLSFN NVEDLHSAKRLALDQELESADLSTPEGEIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015818 [exp]	0	1
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015819 [exp]	1.4	0.7589
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10001225 [exp]	10.8	0.5729
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	11.9	0.5981
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10013961 [exp]	15.4	0.5766
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	23.7	0.5209
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	40.1	0.5016
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	45.2	0.4931
					Lus10011962 [exp]	46.6	0.4931
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	48.1	0.4931
AT3G13910			Protein of unknown function (D...		Lus10016853 [exp]	49.5	0.4931

Compare expression of checked genes

Lus10015818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.