Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036983 [exp] 270 / 2e-86 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056500 [exp] 69 / 9e-14 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015819 pacid=23167683 polypeptide=Lus10015819 locus=Lus10015819.g ID=Lus10015819.BGIv1.0 annot-version=v1.0 ATGGACTCCGATTCAGATTCTGGCGGCTCTTACGTCTCCGCCACGCCTCCAAGAAACTCAAGTCCATCGCCGGCGAAGTTTCCTCCACCACCGAAGCCGC TACGGAAAGCCTCACGCACCAATAAAAGAGCCGGAAACAAAGCTCAATACTCAGATTCTAAATCCCTAGAACATCCGTCCAACACAACCGGTGCTCCTCT CCGGTCAAATGGAGACATCGATAGGTCAGTCGATTCAAAGCCTCTATCGAACTTGCCGTTCCAGGTCTGCTCTTCTTCAGCTCACAACCGATCGATTTCG TCCAATTCATTGGAAACTCTCCCCGCCGGATTCTTCTCCAGGTCTGCTTCCTTCTCCAAAATCCGAAGGGCTTCTCTCACTTTCGAATCAGTTGACGAGG AATGCCGATTCTCTAATTCCAAGCAGCCTGATCCTTCCACGGCGGACCAAGTCCCGAGACCTAGCAAAATGAGGAAGAATCTTAATCTGATTAGAGGCGA AGTGGCTGCGCCCCCGTTGGTCAAAATTCGGGATTCTAACGAAGGCAACATCGTGAAGCTCAATACGAACAAGNNNNNNNNNNNNNNNNNNNNNTGA
AA sequence Show only first row Show all	>Lus10015819 pacid=23167683 polypeptide=Lus10015819 locus=Lus10015819.g ID=Lus10015819.BGIv1.0 annot-version=v1.0 MDSDSDSGGSYVSATPPRNSSPSPAKFPPPPKPLRKASRTNKRAGNKAQYSDSKSLEHPSNTTGAPLRSNGDIDRSVDSKPLSNLPFQVCSSSAHNRSIS SNSLETLPAGFFSRSASFSKIRRASLTFESVDEECRFSNSKQPDPSTADQVPRPSKMRKNLNLIRGEVAAPPLVKIRDSNEGNIVKLNTNKXXXXXXX

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015819 [exp]	0	1
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015818 [exp]	1.4	0.7589
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002276 [exp]	16.6	0.6915
AT4G01575			serine protease inhibitor, Kaz...		Lus10010094 [exp]	81.5	0.6867
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10027974 [exp]	101.3	0.6871
					Lus10039498 [exp]	159.8	0.6792
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	168.5	0.6576
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	213.2	0.6389
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	239.6	0.6370

Compare expression of checked genes

Lus10015819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.