Plant FIBer expression Database

Lus10015820 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67630 699 / 0 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036982
[exp]
1063 / 0 AT1G67630 765 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Lus10015818
[exp]
108 / 1e-24 AT1G27880 434 / 2e-141 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G055900
[exp]
780 / 0 AT1G67630 837 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Potri.008G178951
[exp]
101 / 3e-25 AT1G67630 108 / 2e-28 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Potri.010G096301
[exp]
60 / 1e-10 AT1G67630 59 / 7e-11 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
CL0021 OB PF08418 Pol_alpha_B_N DNA polymerase alpha subunit B N-terminal
Representative CDS sequence
>Lus10015820 pacid=23167701 polypeptide=Lus10015820 locus=Lus10015820.g ID=Lus10015820.BGIv1.0 annot-version=v1.0
ATGGAAGAAGAAATCAAAGTTGAGTTCGAGAAGAGTGGGTTCAGCTTGGACAATCAAGAGGAAATTCTCAAGAAATGTCTCACTTTGTGCATAAATTACA
AGCTTACTCCTTCGGATCTCGTTTCGAGCTGGGACGTTTACTATCTCAATCGGCAACTGAAAGATTTGGTCGTTCAGAATGCGGAAATTGATGGTTTTGT
TTCCTACCTTCAGAATGAGCAGAAAGAAGCTGTGATTAAACAGGAGGCTGATCTGCATTTCTATTCGAGCAAAGATGTAGATATGAGTTTGAATGACGAT
GAGGATAACTTGAAGGATGCAATCCTAAGAACTCCGGAGAAAGTTACGAATCTGTACTTGGACGAGCCATTTGATTCAGCGCTCATGTCGAATCCTAACG
GTTATTCTTCTGAGAAGCCTTCTAGGCTTATAACGCCTTTTGGACGGAGAACTGATAAGTTTGTAACGAGACTCGGCATTGGTAATCCGCCTGATGCCGA
GAATGGCGGTGGTGGTATGGAGGATGTTGAGGAGGATGATGTGATCAAGAGGGTTAAGCCTTTGAAGGGAGTTTCCTTGGTAGTTCATGGAGATGGTCCC
ATGCCAGGTTGCAGATTCATGTATGACAGGATTGAAGACCGGTTTGATGCACTTGACGACAGGATTAGGAGGCGTGCTGCTGCATTTTCTGAATCTGGGA
TTTACGAAGAACCAGCAGATCCTTCTGTTGCTTCACAGAGAAGTGTATTTTGTGTTGGAATGATTTGCTGTGATGAGGAAGGTCGACTAAATGACAAGTC
CATCTTGTTGCAAAGCAGCACTGAGCATTCTGGAGGACAGCGTGCTCGTCTAGATCTACACAAATTGAACCATTTCTCTGTTTTTCCAGGACAGATTGTA
GGTATTGAAGGTCACAATCCAAGTGGATACTGTTTGATTGCATCAAAGCTTGTAGATTCTGTTCCTTTGTCAGCAAACAATGTCGAAGATTTGCACCGTG
CGAAGAGACTGGCTTTGGACCAAGAGCTTGAATCAGCCGATTTATCCACTCCAGAAGAAGAGATCTCAGTGCTTATTGCTTCAGGTCCGTTTACCACAAC
CGACAACTTATTCTATGAACCTCTTTCCGAGCTGCTAGCCTACGCAAGAAGAAAGCAACCACAGTTGCTTATACTGTTGGGACCGTTTATTGATTCTGAC
CATCCTGATATCAAGAAAGGAACCATAGACATGAGTTTCGACGACATTTTTCGTCTTGAAATCATCAAAAGGGTGCAAGATTACGTGGAACACATGGGTC
TGGATGCACGAGTGATTCTCGTACCATCTATACGCGATGCTAACCACGACTTCGTTTTCCCTCAGCCTGCGTTCGATATTAATCTTCCAGAACTCAAACA
TCAGGTCACTAGCATCACGAATCCAGGCACTTTCGAAGCCAATAAGGTGAAAGTTGGATGCTGCACAGTGGACATTCTCAAGCAGCTCAGTGGAGAAGAG
CTATCTCGCTTCTATCCTCTCTATCCACCGGCAGAAGATGTCCCTGTAGATTTCTCACTCGCTCCAAAAGCTCTTCACGTCGATTCTGCACCCGACATTC
TTATACTACCTTCAGACACCAAGTACTTCATTAAGGTTCTAACGATTGGCGTCGGAAATGAAGATGAAGAGGCAAAGAAGTGCATTTGTATAAACCCAGG
AAGGCTGGCTAAGGGTGAAGGTGGTGGCACATTTGCAGAGATCAAATATGCCGGTAGCCCTGATAAAATGAATGCTTCGATCTTGAGCATATAG
AA sequence
>Lus10015820 pacid=23167701 polypeptide=Lus10015820 locus=Lus10015820.g ID=Lus10015820.BGIv1.0 annot-version=v1.0
MEEEIKVEFEKSGFSLDNQEEILKKCLTLCINYKLTPSDLVSSWDVYYLNRQLKDLVVQNAEIDGFVSYLQNEQKEAVIKQEADLHFYSSKDVDMSLNDD
EDNLKDAILRTPEKVTNLYLDEPFDSALMSNPNGYSSEKPSRLITPFGRRTDKFVTRLGIGNPPDAENGGGGMEDVEEDDVIKRVKPLKGVSLVVHGDGP
MPGCRFMYDRIEDRFDALDDRIRRRAAAFSESGIYEEPADPSVASQRSVFCVGMICCDEEGRLNDKSILLQSSTEHSGGQRARLDLHKLNHFSVFPGQIV
GIEGHNPSGYCLIASKLVDSVPLSANNVEDLHRAKRLALDQELESADLSTPEEEISVLIASGPFTTTDNLFYEPLSELLAYARRKQPQLLILLGPFIDSD
HPDIKKGTIDMSFDDIFRLEIIKRVQDYVEHMGLDARVILVPSIRDANHDFVFPQPAFDINLPELKHQVTSITNPGTFEANKVKVGCCTVDILKQLSGEE
LSRFYPLYPPAEDVPVDFSLAPKALHVDSAPDILILPSDTKYFIKVLTIGVGNEDEEAKKCICINPGRLAKGEGGGTFAEIKYAGSPDKMNASILSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10015820
[exp]
0 1
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10036982
[exp]
2.2 0.9410
AT1G75150 unknown protein Lus10010814
[exp]
5.9 0.9310
AT2G29570 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL... Lus10005874
[exp]
6.0 0.9372
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10032469
[exp]
6.2 0.9378
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10004453
[exp]
6.6 0.9395
AT2G28130 unknown protein Lus10016147
[exp]
6.6 0.9080
AT4G12740 HhH-GPD base excision DNA repa... Lus10001182
[exp]
7.0 0.8814
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10016695
[exp]
7.7 0.9102
AT5G22110 DPB2, CYL2, DBP... CYCLOPS 2, DNA polymerase epsi... Lus10026361
[exp]
8.0 0.9140
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10042967
[exp]
8.4 0.9238

Lus10015820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.