Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67620 168 / 3e-53 Lojap-related protein (.1) AT3G12930 50 / 2e-07 Lojap-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036979 [exp] 296 / 3e-104 AT1G67620 129 / 1e-38 Lojap-related protein (.1) Lus10002544 [exp] 42 / 0.0001 AT3G12930 284 / 2e-97 Lojap-related protein (.1) Lus10027381 [exp] 41 / 0.0002 AT3G12930 280 / 5e-96 Lojap-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105700 [exp] 224 / 4e-75 AT1G67620 184 / 1e-59 Lojap-related protein (.1) Potri.001G458600 [exp] 45 / 1e-05 AT3G12930 301 / 6e-104 Lojap-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF02410 [flax] [poplar] RsfS Ribosomal silencing factor during starvation
Representative CDS sequence Show only first row Show all	>Lus10015822 pacid=23167723 polypeptide=Lus10015822 locus=Lus10015822.g ID=Lus10015822.BGIv1.0 annot-version=v1.0 ATGTTGACGGCTGCTCTCCGATCAAATTCTTCTTCCTTCCTCCGCCAGTCATGGCGGCTAGGGTTTCCATGTTCCAATCGCGGTCTCTGTTCTTCAGCCC CTCAATCAGAAATAAACAAAAGCGAAGGAAGCTTGCTGGAGCTTGACGAGGTGGAGAAGATTCTCACCGACGTTAGAGCCGATGATGTTAAAGTGATACC TGCCGGAAACCGCTACGACTGGGTCGATTACATGGTGATTGCCACCGGTAGGTCCACCTGGCACGTCAAGAACATCGCCGAAGCTCTTATTTACAAGGCA GGTTTGGTTCTGCAAGCTCGTTCGTTTGTTAAGCAGAAGCAGAAGGGGGCTCAGAGAATGATGCTTCCAAGCGTTGAAGGGCAAGAAGGAGGGAATTGGA TCGTCATTGACTCTGGAAGGGTGATAGTTCATGCTCTTGATGAGAATGCTAGAACTTACTACAAGTTGGAGAATCTTTGGAATTCAGATAAATCTCAGAA GGATCCAGCTCAGGATCTAACAAAGGCTTTTGTGAAGATACGACCCAAGAACAATTCTAAGAAGCGAGTGCCGAGCAAATGA
AA sequence Show only first row Show all	>Lus10015822 pacid=23167723 polypeptide=Lus10015822 locus=Lus10015822.g ID=Lus10015822.BGIv1.0 annot-version=v1.0 MLTAALRSNSSSFLRQSWRLGFPCSNRGLCSSAPQSEINKSEGSLLELDEVEKILTDVRADDVKVIPAGNRYDWVDYMVIATGRSTWHVKNIAEALIYKA GLVLQARSFVKQKQKGAQRMMLPSVEGQEGGNWIVIDSGRVIVHALDENARTYYKLENLWNSDKSQKDPAQDLTKAFVKIRPKNNSKKRVPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	0	1
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	1.0	0.8973
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	3.0	0.8716
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	3.2	0.8609
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	4.5	0.8798
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	6.3	0.8470
AT3G18510			unknown protein		Lus10032475 [exp]	6.5	0.8542
AT5G12240			unknown protein		Lus10026824 [exp]	6.6	0.8714
AT1G47820			unknown protein		Lus10035088 [exp]	9.8	0.8336
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	9.9	0.8433
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	13.2	0.8200

Compare expression of checked genes

Lus10015822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.