Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13450 528 / 0 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 506 / 2e-180 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 67 / 2e-12 Trihelix Homeodomain-like superfamily protein (.1) AT2G38250 67 / 3e-12 Trihelix Homeodomain-like superfamily protein (.1) AT1G76880 67 / 8e-12 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 64 / 8e-11 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G63420 59 / 3e-09 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT1G33240 53 / 2e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 50 / 1e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 50 / 2e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036978 [exp] 724 / 0 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10028584 [exp] 66 / 1e-11 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 65 / 5e-11 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 65 / 5e-11 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10004806 [exp] 63 / 7e-11 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10002481 [exp] 56 / 5e-10 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10042806 [exp] 62 / 6e-10 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 61 / 8e-10 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 56 / 2e-08 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179700 [exp] 629 / 0 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.010G055000 [exp] 625 / 0 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G129900 [exp] 64 / 4e-11 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 64 / 8e-11 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 64 / 8e-11 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 63 / 1e-10 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 62 / 3e-10 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 61 / 5e-10 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.012G095800 [exp] 61 / 1e-09 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.011G147400 [exp] 58 / 6e-09 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015824 pacid=23167648 polypeptide=Lus10015824 locus=Lus10015824.g ID=Lus10015824.BGIv1.0 annot-version=v1.0 ATGTACCTATCCGAGAAGCCACGCCCAATCGACTTCTACAAAGAAGAAATGGCGCCCAATTCACAAGACAACATGATCATCGAAGTCGTCTCACCCAATT GCGATTTGCATCCACTTCCTCTTCAGCAACACACCAGCAATCCCAATCCTCCTCCTCCGCCGCCGCCGATGATACTGGGAGAGAGCAGCGGAGAGGACAC CCATGAGATTAGGGCGCCAAAGAAGAGGGCGGAGACGTGGGTCCAGGACGAGATGAGGTGCTTGATCGCCCTGAGGAGGGAGATGGATGGGCTTTTCAAT ACTTCAAAGTCGAACAAGCACCTTTGGGAGCAGATATCTCTGAAGATGAGGGATAAAGGGTTTGATAGGTCTCCCACTATGTGTACTGACAAGTGGAGGA ACTTGTTGAAGGAGTTTAAGAAGGTGAAGCATCAGGATAAAGGGTCTGCTAAAATGTCTTACTATAAGGAGATTGACGAGATTTTGAAAGAGAGGGGGAA GACTACTAGTCAACAGCAGCAGCAGCAGTATAAGTGTCCTACTCCGACTTCTAAAGTTGATTCCTTCATGCAGTTTGCTGAGAAAGGGTTTGAAGACACG AGTATAACTTTTGGACCCGTTGAAGCTAGTGGCAGGCCAACACTGAATCTCGAAAGACGGTTGGATCACGACGGTCATCCTCTTGCAATCACCGCAGCCG ATGCTGTTGGAGCAAGTGGAGTTCCTCCATGGAACTGGAGAGAAACCCCTGCAAGTGGCTCCGAAAGCCAGTCGTATGGTGGGAGGGTGATATTGGTCAA ATATGGAGACTACTTGAGAAAGATCGGTATTGATGGTACTGCTGATGCCATCAAGGAGGCAATCAGGTCTGCTTTCAGATTGAGAACGAAACGGGCGTTC TGGCTGGAAGATGAAGACCAAGTAATACGCAGCCTCGACCGGGACATGCCTTTGGGGAACTACAGTCTTCACCTCGACGAAGGTTTGGCTATAAAAGTGT GCTTGTACGACGAAACGGAACACATTCCAGTTCACACCGAGGAGAAACTGTTCTATACCGAGGATGATTACCGGGAGTTTCTGAGCCGAAGGGGATGGAC ATGTCTAAGGGAGTTTGACGGTTACAGAAACATCGACAGTATGGATGATCTTCGACCTGGTGCCGTGTATCGAGGAGTGAATTGA
AA sequence Show only first row Show all	>Lus10015824 pacid=23167648 polypeptide=Lus10015824 locus=Lus10015824.g ID=Lus10015824.BGIv1.0 annot-version=v1.0 MYLSEKPRPIDFYKEEMAPNSQDNMIIEVVSPNCDLHPLPLQQHTSNPNPPPPPPPMILGESSGEDTHEIRAPKKRAETWVQDEMRCLIALRREMDGLFN TSKSNKHLWEQISLKMRDKGFDRSPTMCTDKWRNLLKEFKKVKHQDKGSAKMSYYKEIDEILKERGKTTSQQQQQQYKCPTPTSKVDSFMQFAEKGFEDT SITFGPVEASGRPTLNLERRLDHDGHPLAITAADAVGASGVPPWNWRETPASGSESQSYGGRVILVKYGDYLRKIGIDGTADAIKEAIRSAFRLRTKRAF WLEDEDQVIRSLDRDMPLGNYSLHLDEGLAIKVCLYDETEHIPVHTEEKLFYTEDDYREFLSRRGWTCLREFDGYRNIDSMDDLRPGAVYRGVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	0	1
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	1.0	0.9723
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	2.8	0.9672
AT4G19160			unknown protein		Lus10038244 [exp]	4.6	0.9643
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	5.2	0.9688
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	5.7	0.9605
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	7.1	0.9586
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	7.7	0.9715
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	8.7	0.9548
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	9.3	0.9508
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	10.7	0.9562

Compare expression of checked genes

Lus10015824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.