Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04120 541 / 0 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 541 / 0 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G79530 462 / 3e-163 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 456 / 8e-161 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G42970 248 / 8e-79 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 234 / 7e-75 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 231 / 8e-73 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036976 [exp] 615 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 595 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 595 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 537 / 0 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10014603 [exp] 536 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 536 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 456 / 6e-161 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 456 / 7e-161 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10016033 [exp] 239 / 2e-75 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055400 [exp] 551 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.001G335800 [exp] 545 / 0 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 541 / 0 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G179300 [exp] 534 / 0 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 530 / 0 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G172400 [exp] 459 / 3e-162 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.008G083900 [exp] 455 / 2e-160 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.002G007100 [exp] 238 / 3e-75 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 236 / 3e-74 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 226 / 8e-71 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015826 pacid=23167673 polypeptide=Lus10015826 locus=Lus10015826.g ID=Lus10015826.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGTAAGATCAAGATCGGAATCAACGGATTCGGCCGTATCGGTCGTTTGGTTGCTAGGGTTGCTCTTCAGAGAGACGATGTTGAGCTCGTCG CTGTTAACGATCCTTTCATCCCTACCGATTACATGGTTTACATGTTCAAGTACGACACCGTTCACGGTCACTGGAAGCACAGTGATGTGAAGGTGAAAGA TGAGAACACTCTTTCCTTCGGCGACAAGGACGTGAAAGTTTTCGGTCTCAGGAACCCTGAGGAGATCCCATGGGGTTCAGTTGGTGCTGACTTCGTTGTT GAGTCCACCGGTGTTTTCACTGACAAGGACAAGGCCGCAGCTCACTTGAAGGGTGGTGCTAAGAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCACCCA TGTTCGTTGTTGGTGTCAACGAGAATGAATACAAGCCAGAGCTTGACATCGTCTCCAACGCCAGCTGCACCACTAACTGCCTTGCTCCCTTGGCCAAGGT TATCAACGACAGATTTGGAATTGTTGAGGGTCTCATGACCACTGTCCATGCCATCACTGCCACCCAGAAGACTGTTGATGGACCGTCAAACAAGGACTGG AGGGGCGGAAGAGCAGCTTCCTTCAACATCATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTGGGGAAGGTTCTCCCAGTGCTCAACGGCAAGTTGACTG GAATGTCTTTTCGTGTCCCAACTGCTGATGTCTCCGTTGTTGACTTGACCGTCAAGCTCGAGAAGGCTGCAACCTACGAGCAAATCAAGGCTGCCATCAA GGAGGAGTCAGAGGGTAAACTCAAGGGTATTCTTGGATACGTCGATGAGGATGTTGTCTCTGCTGATTTCCTTGGTGACAACAGGTCAAGCATCTTCGAT GCCAAGGCGGGAATTGCATTGAATGACAACTTCGTCAAGCTCGTGTCGTGGTATGATAACGAATGGGGCTACAGTACCCGTGTCGTCGACTTGATCTCCC ACATGGCCAAGTCCCTTTGA
AA sequence Show only first row Show all	>Lus10015826 pacid=23167673 polypeptide=Lus10015826 locus=Lus10015826.g ID=Lus10015826.BGIv1.0 annot-version=v1.0 MAGGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIPTDYMVYMFKYDTVHGHWKHSDVKVKDENTLSFGDKDVKVFGLRNPEEIPWGSVGADFVV ESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNENEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSNKDW RGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTADVSVVDLTVKLEKAATYEQIKAAIKEESEGKLKGILGYVDEDVVSADFLGDNRSSIFD AKAGIALNDNFVKLVSWYDNEWGYSTRVVDLISHMAKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	0	1
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	1.0	0.9816
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	1.7	0.9701
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	2.0	0.9706
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	2.8	0.9543
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	3.2	0.9652
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	3.5	0.9692
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	4.6	0.9567
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	5.6	0.9380
AT2G02850		ARPN	plantacyanin (.1)		Lus10041850 [exp]	5.7	0.9366
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	6.5	0.9567

Compare expression of checked genes

Lus10015826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.