Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04130 535 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22670 283 / 6e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 184 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 182 / 8e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 179 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 179 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 176 / 2e-49 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 179 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 172 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 169 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036975 [exp] 756 / 0 AT3G04130 473 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041193 [exp] 306 / 1e-97 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 182 / 4e-51 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 181 / 9e-50 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 177 / 2e-49 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 179 / 3e-49 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 176 / 4e-49 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 177 / 1e-48 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042362 [exp] 176 / 1e-48 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055500 [exp] 605 / 0 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G084000 [exp] 281 / 2e-88 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 268 / 3e-83 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 266 / 3e-82 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G179201 [exp] 236 / 1e-74 AT3G04130 231 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G070200 [exp] 199 / 1e-57 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 197 / 1e-56 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 193 / 2e-55 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 180 / 1e-49 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 177 / 1e-49 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015827 pacid=23167643 polypeptide=Lus10015827 locus=Lus10015827.g ID=Lus10015827.BGIv1.0 annot-version=v1.0 ATGGTGTTTCTTCAAAAGCTTCCGAGGCAGTCCAAATCCTTTCTCAGTCTGCTGCACTCTTGTTCCATATATGCCTTTGGTTACCGATCTCTTTCCCTAC AAGCCACTAAATTCGATGAACAAGAGCAAACTAATTCAGCAAATCCGGCTGATGTCAGCTTCATAATAGCCAAAGTCCACGACCATGGTGGCAGCAGCCA CAACGAGATTCTTCAATCACTAATGCAAGACAATGTCTGTAAGAACATTCAACTGTCTCACGATCTCCTTTCCAAGTTGCTATCTCGATTCAAAGACGAT TGGAAGTCTGCATTGGCCGTTTTCAAATGGGCTGAGTCATCGAAGCCGGACTACCATCATACCCCCGAGGCTTACGACTCCGTTGTGGATATATTGGGCA AGATGAGGCAGATGGAACAGATGAATGCCTTCTTACACGAAATGAATCGAGATAATCTCGTAACGCTCAAGACGTTGGGGAAGGCTATGAGGAGGTACAC CGGTGCAGGGCAGTGGGAGGATGCCGTTAGGCTGTTCGATAAGTTGGAGACTTTCGGGCTGAGGAAGAGCACCGATTCGATGAACTTGCTGCTTGACACT CTTTGTAAAGAGCGAAAAGTAGAGAAGGCTCGCGAGATTTTCTTGGAGCTGAAGGAACACATTCCGCCCAATGCCAACACGTACAACATCTTCATACATG GTTGGTGTAAGATCAATCGAGTCGAGGAGGCTTACTGGACGTTACAAGAGATGAAAGGGTGTGGAGTCAAGCCTTGTGTGAGAAGTTACTCCACGATCGT GCAGTTCCATTGCCAGCAAGGGAAGTTCGGGGAGGTGTATAGGGTTCTTGATGAGATGGAAGAACAAGGGTTTCCACCTAATGTTGTTACTTATACTACG GTGCTGTGTCATTTGACGAAATTTGAGGATTATGATAGAGGTTTCGAGATAGTGGAGAGGATGAAGTCGGTTGGGTGCAAACCCGATACGTTGTTCTACA ACGCGTGGATTCATATGCTCGGAAGAGCTGGGAAAGTAGAGGAGGCTGTTCGTGTTTTCGATGTAGAGATGGCGAGGGTGGGTGTGGTGCCAAATACATC GACTTATAACTCAATGGTTGCGATGTTTTGTCACCAGGGTCAACCATCAAGGGGTTTCGATCTTCTCAGGGAGATGGAAAGTTCGATGCTGTGTAAGCCG GATGTTCATACCTACTATCCGTTGCTTCAGTCGTGCTTGAAGAGTGGGAAGGTGGATGGTTTGTTGAGACAGTTGTTGGACGATATGGTGAACAAGCATC ATCTCAGTCTCGATATATCGGCGTACAAGCTTTTGATTCATGGACTGTGTAGAGCGGATAGATGTGAGTGGGCTTACCGGCTGTTTGAGGAAATGATAAG TAAGGATATAAAGCCTAGGTATCAAACGTGCAATGTTCTTCTGGAGGAAGTTAGGCTGAATGGTATGCTTGCTGCTGCTGAAAAGATTGAAGCTTTCATG AAGCATATTTAA
AA sequence Show only first row Show all	>Lus10015827 pacid=23167643 polypeptide=Lus10015827 locus=Lus10015827.g ID=Lus10015827.BGIv1.0 annot-version=v1.0 MVFLQKLPRQSKSFLSLLHSCSIYAFGYRSLSLQATKFDEQEQTNSANPADVSFIIAKVHDHGGSSHNEILQSLMQDNVCKNIQLSHDLLSKLLSRFKDD WKSALAVFKWAESSKPDYHHTPEAYDSVVDILGKMRQMEQMNAFLHEMNRDNLVTLKTLGKAMRRYTGAGQWEDAVRLFDKLETFGLRKSTDSMNLLLDT LCKERKVEKAREIFLELKEHIPPNANTYNIFIHGWCKINRVEEAYWTLQEMKGCGVKPCVRSYSTIVQFHCQQGKFGEVYRVLDEMEEQGFPPNVVTYTT VLCHLTKFEDYDRGFEIVERMKSVGCKPDTLFYNAWIHMLGRAGKVEEAVRVFDVEMARVGVVPNTSTYNSMVAMFCHQGQPSRGFDLLREMESSMLCKP DVHTYYPLLQSCLKSGKVDGLLRQLLDDMVNKHHLSLDISAYKLLIHGLCRADRCEWAYRLFEEMISKDIKPRYQTCNVLLEEVRLNGMLAAAEKIEAFM KHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04130			Tetratricopeptide repeat (TPR)...		Lus10015827 [exp]	0	1
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	21.1	0.8695
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10019495 [exp]	26.7	0.8669
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	27.6	0.8690
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	34.7	0.8656
AT2G40800			unknown protein		Lus10012858 [exp]	36.1	0.8674
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	49.1	0.8576
AT5G11280			unknown protein		Lus10002030 [exp]	56.2	0.8508
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	56.4	0.8150
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019701 [exp]	63.3	0.8345
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	64.8	0.8401

Compare expression of checked genes

Lus10015827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.