Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10160 305 / 6e-106 Thioesterase superfamily protein (.1) AT2G22230 299 / 1e-103 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020419 [exp] 387 / 2e-138 AT5G10160 307 / 7e-107 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020300 [exp] 323 / 6e-113 AT5G10160 310 / 6e-108 Thioesterase superfamily protein (.1) Potri.001G209900 [exp] 152 / 9e-48 AT5G10160 157 / 2e-50 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF07977 [flax] [poplar] FabA FabA-like domain
Representative CDS sequence Show only first row Show all	>Lus10015830 pacid=23163324 polypeptide=Lus10015830 locus=Lus10015830.g ID=Lus10015830.BGIv1.0 annot-version=v1.0 ATGGCGGCATCAGCGGCTCTCGCCAATTCCCTTCTACTTCCCTCTCGTTCTACGGCTTCTGCCCCAACTAATTCCAATGCGCTCATTCCGTCGAGATTCT CGCTCTCATGCTCTAGATCCCTATTGTTGACTACCCAGTTGAAGATGTCGAGAAATTCGAAATCTTTTGTAGCCAACTCTTCTCTTGAAGACGCCTCCGC TGCTGCTGTTGACGAACCCAAAAAGGACGAGACCCCCATCGAGCTGAAGTATCCAGCTTATCCTACTGTGATGGACATTAACCAGATTCGCGAGATATTG CCACATCGGTTCCCATTTCTGCTGGTGGATAGAGTGATTGAGTACAATCCTGGTGTTTCGGCTGTTGCAATAAAAAATGTTACGATAAATGACAATTTCT TCCCTGGTCATTTTCCTGAGAGGCCAATTATGCCTGGTGTTCTAATGATTGAGGCAATGGCACAAGTGGGTGGGTTGGTAATGCTGCAACCAGAAATCGG AGGATCGAAGGACTCGTTTTTCTTCGCTGGAATCGACAAGGTCAGGTTCCGTAAACCAGTGATAGCTGGAGACACCTTGGTGATGAGAATGACACTTGTG AAGCTTCAGAAACGTTTTGGAATTGCAAAGATGGAAGGCAAAGCTTATGTTGGAAGCGACGTGGTCTGCGAAGGCGAGTTCCTCATGGCCATGGGTTAA
AA sequence Show only first row Show all	>Lus10015830 pacid=23163324 polypeptide=Lus10015830 locus=Lus10015830.g ID=Lus10015830.BGIv1.0 annot-version=v1.0 MAASAALANSLLLPSRSTASAPTNSNALIPSRFSLSCSRSLLLTTQLKMSRNSKSFVANSSLEDASAAAVDEPKKDETPIELKYPAYPTVMDINQIREIL PHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMIEAMAQVGGLVMLQPEIGGSKDSFFFAGIDKVRFRKPVIAGDTLVMRMTLV KLQKRFGIAKMEGKAYVGSDVVCEGEFLMAMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	0	1
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	1.4	0.9681
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	1.7	0.9729
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	2.4	0.9654
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	2.8	0.9624
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	3.7	0.9517
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	6.9	0.9510
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	7.4	0.9552
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	7.7	0.9239
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	8.0	0.9398
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	8.8	0.9525

Compare expression of checked genes

Lus10015830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.