Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15820 384 / 1e-136 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT1G45474 134 / 2e-38 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G19150 131 / 4e-37 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT3G61470 124 / 2e-34 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT5G01530 110 / 5e-29 LHCB4.1 light harvesting complex photosystem II (.1) AT3G47470 109 / 5e-29 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G08940 107 / 5e-28 LHCB4.2 light harvesting complex photosystem II (.1.2) AT2G40100 106 / 1e-27 LHCB4.3 light harvesting complex photosystem II (.1.2) AT3G54890 102 / 3e-26 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G61520 102 / 6e-26 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015834 [exp] 445 / 8e-161 AT1G15820 393 / 7e-140 light harvesting complex photosystem II subunit 6 (.1) Lus10020415 [exp] 437 / 5e-153 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10020418 [exp] 281 / 2e-97 AT1G15820 247 / 1e-83 light harvesting complex photosystem II subunit 6 (.1) Lus10042657 [exp] 138 / 8e-40 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10021730 [exp] 135 / 6e-39 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10011361 [exp] 126 / 3e-35 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 125 / 1e-34 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 124 / 2e-34 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10001644 [exp] 118 / 4e-32 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210000 [exp] 407 / 8e-146 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1) Potri.003G020400 [exp] 402 / 7e-144 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.006G139600 [exp] 131 / 2e-37 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G029700 [exp] 129 / 2e-36 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.001G056700 [exp] 124 / 2e-34 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.003G171500 [exp] 122 / 7e-34 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.015G062200 [exp] 109 / 6e-29 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.016G115200 [exp] 105 / 3e-27 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.008G067300 [exp] 104 / 9e-27 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.014G172400 [exp] 103 / 3e-26 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10015831 pacid=23163313 polypeptide=Lus10015831 locus=Lus10015831.g ID=Lus10015831.BGIv1.0 annot-version=v1.0 ATGTGCAGCGCGCCCTCACTATTGCTTGTGGCGGCCAGGCGGTCAAAAACGGCCGCCATTGGTGGTGGTAGAAGAAAATTGGTAATAGTAGCTGCTAAGA AATCATGGATCCCTGCTGTTAAAGGCGGCGGCAACCTCGTCGATCCCGAATGGCTCGATGGCTCGCTGCCGGGTGACTTCGGGTTCGACCCGCTGGGTTT GGGGAAGGACCCGGCGTTCCTAAAATGGTACAGAGAAGCGGAGCTGATCCACGGGCGGTGGGCAATGGCGGCGGTGCTAGGGATCTTCGTAGGGCAAGCA TGGAGCGGAATCCCGTGGTTCGAGGCAGGAGCGGACCCGGGAGCTATTGCTCCGTTCTCGTTCGGGTCACTGCTGGGTACCCAACTCATACTAATGGGTT GGGTTGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGACTCTCAGTCGGTAGAATGGGCGACACCTTGGTCAAGGACTTCCGAGAATTTTGCAAACGC CACAGGGGAACAGGGTTACCCTGGTGGCAAGTTCTTCGACCCGCTTGGATTCGCCGGAACGTTGAAGGACGGAGAGTACATTGCCGACGGAGAGAAGCTT GAGAGATTGAAGTTGGCCGAGATCAAACACGCGAGGCTCGCCATGTTGGCTATGCTCATCTTTTACTTTGAGGCTGGACAGGGGAAAACTCCTTTGGGAG CTCTCGGCCTTTAG
AA sequence Show only first row Show all	>Lus10015831 pacid=23163313 polypeptide=Lus10015831 locus=Lus10015831.g ID=Lus10015831.BGIv1.0 annot-version=v1.0 MCSAPSLLLVAARRSKTAAIGGGRRKLVIVAAKKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA WSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLGFAGTLKDGEYIADGEKL ERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	0	1
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	1.0	0.9622
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	3.0	0.9558
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	3.2	0.9574
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	3.5	0.9498
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10023320 [exp]	5.0	0.9421
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10016780 [exp]	5.5	0.9207
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	7.3	0.9407
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	8.5	0.9251
AT1G51400			Photosystem II 5 kD protein (....		Lus10030132 [exp]	8.5	0.9285
AT5G40500			unknown protein		Lus10002519 [exp]	9.5	0.8968

Compare expression of checked genes

Lus10015831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.